BreakDancer: an algorithm for high-resolution mapping of genomic structural variation von Chen, Ken, Wallis, John W, McLellan, Michael D, Larson, David E, Kalicki, Joelle M, Pohl, Craig S, McGrath, Sean D, Wendl, Michael C, Zhang, Qunyuan, Locke, Devin P, Shi, Xiaoqi, Fulton, Robert S, Ley, Timothy J, Wilson, Richard K, Ding, Li, Mardis, Elaine R

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Somatic neurofibromatosis type 1 (NF1) inactivation characterizes NF1-associated pilocytic astrocytoma von Gutmann, David H, McLellan, Michael D, Hussain, Ibrahim, Wallis, John W, Fulton, Lucinda L, Fulton, Robert S, Magrini, Vincent, Demeter, Ryan, Wylie, Todd, Kandoth, Cyriac, Leonard, Jeffrey R, Guha, Abhijit, Miller, Christopher A, Ding, Li, Mardis, Elaine R

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PathScan: a tool for discerning mutational significance in groups of putative cancer genes von WENDL, Michael C, WALLIS, John W, LING LIN, KANDOTH, Cyriac, MARDIS, Elaine R, WILSON, Richard K, LI DING

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Pay for Genomics von Wallis, John W

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BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data von KEN CHEN, WALLIS, John W, WILSON, Richard K, WEINSTEIN, John N, LI DING, KANDOTH, Cyriac, KALICKI-VEIZER, Joelle M, MUNGALL, Karen L, MUNGALL, Andrew J, JONES, Steven J, MARRA, Marco A, LEY, Timothy J, MARDIS, Elaine R

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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing von Ding, Li, Ley, Timothy J., Larson, David E., Miller, Christopher A., Koboldt, Daniel C., Welch, John S., Ritchey, Julie K., Young, Margaret A., Lamprecht, Tamara, McLellan, Michael D., McMichael, Joshua F., Wallis, John W., Lu, Charles, Shen, Dong, Harris, Christopher C., Dooling, David J., Fulton, Robert S., Fulton, Lucinda L., Chen, Ken, Schmidt, Heather, Kalicki-Veizer, Joelle, Magrini, Vincent J., Cook, Lisa, McGrath, Sean D., Vickery, Tammi L., Wendl, Michael C., Heath, Sharon, Watson, Mark A., Link, Daniel C., Tomasson, Michael H., Shannon, William D., Payton, Jacqueline E., Kulkarni, Shashikant, Westervelt, Peter, Walter, Matthew J., Graubert, Timothy A., Mardis, Elaine R., Wilson, Richard K., DiPersio, John F.

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BreakTrans: uncovering the genomic architecture of gene fusions von Chen, Ken, Navin, Nicholas E, Wang, Yong, Schmidt, Heather K, Wallis, John W, Niu, Beifang, Fan, Xian, Zhao, Hao, McLellan, Michael D, Hoadley, Katherine A, Mardis, Elaine R, Ley, Timothy J, Perou, Charles M, Wilson, Richard K, Ding, Li

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Whole-genome analysis informs breast cancer response to aromatase inhibition von Ellis, Matthew J., Ding, Li, Shen, Dong, Luo, Jingqin, Suman, Vera J., Wallis, John W., Van Tine, Brian A., Hoog, Jeremy, Goiffon, Reece J., Goldstein, Theodore C., Ng, Sam, Lin, Li, Crowder, Robert, Snider, Jacqueline, Ballman, Karla, Weber, Jason, Chen, Ken, Koboldt, Daniel C., Kandoth, Cyriac, Schierding, William S., McMichael, Joshua F., Miller, Christopher A., Lu, Charles, Harris, Christopher C., McLellan, Michael D., Wendl, Michael C., DeSchryver, Katherine, Allred, D. Craig, Esserman, Laura, Unzeitig, Gary, Margenthaler, Julie, Babiera, G. V., Marcom, P. Kelly, Guenther, J. M., Leitch, Marilyn, Hunt, Kelly, Olson, John, Tao, Yu, Maher, Christopher A., Fulton, Lucinda L., Fulton, Robert S., Harrison, Michelle, Oberkfell, Ben, Du, Feiyu, Demeter, Ryan, Vickery, Tammi L., Elhammali, Adnan, Piwnica-Worms, Helen, McDonald, Sandra, Watson, Mark, Dooling, David J., Ota, David, Chang, Li-Wei, Bose, Ron, Ley, Timothy J., Piwnica-Worms, David, Stuart, Joshua M., Wilson, Richard K., Mardis, Elaine R.

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Physical map-assisted whole-genome shotgun sequence assemblies von Warren, René L, Varabei, Dmitry, Platt, Darren, Huang, Xiaoqiu, Messina, David, Yang, Shiaw-Pyng, Kronstad, James W, Krzywinski, Martin, Warren, Wesley C, Wallis, John W, Hillier, LaDeana W, Chinwalla, Asif T, Schein, Jacqueline E, Siddiqui, Asim S, Marra, Marco A, Wilson, Richard K, Jones, Steven J M

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Demographic history and rare allele sharing among human populations von Gravel, Simon, Henn, Brenna M, Gutenkunst, Ryan N, Indap, Amit R, Marth, Gabor T, Clark, Andrew G, Yu, Fuli, Gibbs, Richard A, Bustamante, Carlos D

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Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel von Delaneau, Olivier, Marchini, Jonathan

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Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome von Mardis, Elaine R, Ding, Li, Dooling, David J, Larson, David E, McLellan, Michael D, Chen, Ken, Koboldt, Daniel C, Fulton, Robert S, Fulton, Lucinda A, Delehaunty, Kim D, McGrath, Sean D, Locke, Devin P, Magrini, Vincent J, Abbott, Rachel M, Vickery, Tammi L, Reed, Jerry S, Robinson, Jody S, Wylie, Todd, Smith, Scott M, Carmichael, Lynn, Eldred, James M, Harris, Christopher C, Walker, Jason, Peck, Joshua B, Du, Feiyu, Dukes, Adam F, Sanderson, Gabriel E, Brummett, Anthony M, Clark, Eric, McMichael, Joshua F, Meyer, Rick J, Schindler, Jonathan K, Pohl, Craig S, Wallis, John W, Shi, Xiaoqi, Lin, Ling, Schmidt, Heather, Tang, Yuzhu, Haipek, Carrie, Wiechert, Madeline E, Ivy, Jolynda V, Kalicki, Joelle, Elliott, Glendoria, Ries, Rhonda E, Payton, Jacqueline E, Westervelt, Peter, Tomasson, Michael H, Watson, Mark A, Baty, Jack, Heath, Sharon, Shannon, William D, Nagarajan, Rakesh, Link, Daniel C, Walter, Matthew J, Graubert, Timothy A, DiPersio, John F, Wilson, Richard K, Ley, Timothy J

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Evolutionary and Biomedical Insights from the Rhesus Macaque Genome von Gibbs, Richard A, Rogers, Jeffrey, Weinstock, George M, Mardis, Elaine R, Remington, Karin A, Strausberg, Robert L, Wilson, Richard K, Batzer, Mark A, Eichler, Evan E, Hahn, Matthew W, Makova, Kateryna D, Siepel, Adam, Attaway, Tony, Bell, Stephanie, Bernard, Kelly E, Buhay, Christian J, Chandrabose, Mimi N, Delehaunty, Kimberly D, Dugan-Rocha, Shannon, Fulton, Lucinda A, Godfrey, Jennifer, Hernandez, Judith, Khan, Ziad Mohid, Cree, Andrew, Fowler, R. Gerald, Lee, Sandra, Li, Zhangwan, Liu, Yih-shin, Moore, Stephanie M, Muzny, Donna, Okwuonu, Geoffrey O, Pai, Grace, Paul, Heidie A, Pfannkoch, Cynthia, Ruiz, San Juana, Santibanez, Jireh, Schneider, Brian W, Sodergren, Erica, Warren, Wesley, Chinwalla, Asif T, Halpern, Aaron L, Hillier, LaDeana W, Huang, Xiaoqiu, Pepin, Kymberlie H, Qin, Xiang, Venter, Eli, Wallis, John W, Yang, Shiaw-Pyng, Marra, Marco A, Rocchi, Mariano, Schein, Jacqueline E, Baertsch, Robert, Clarke, Laura, Glasscock, Jarret, Havlak, Paul, Jackson, Andrew R, Jiang, Huaiyang, Liu, Yue, Song, Henry Xing-Zhi, Zhang, Lan, Han, Kyudong, Konkel, Miriam K, Smit, Arian F.A, Wang, Hui, Xing, Jinchuan, Cheng, Ze, Raney, Brian, Cox, Michael J, Dumas, Laura J, Han, Sang-Gook, Hopkins, Janet, Karimpour-Fard, Anis, Vinar, Tomas, Addo-Quaye, Charles, Denby, Alexandra, Hubisz, Melissa J, Indap, Amit, Kosiol, Carolin, Nielsen, Rasmus, Vallender, Eric J, Clark, Andrew G, Hernandez, Ryan D, Kehrer-Sawatzki, Hildegard, Kolb, Jessica, Ren, Yanru, Wheeler, David A, Chen, Rui, Cooper, David N, Giardine, Belinda, Hsu, Fan, O'Brien, William E, Stenson, Peter D, Wallace, James C, Ke, Hui, Wang, Peng, Barber, Galt P, Karolchik, Donna, Kern, Andy D, Kuhn, Robert M, Zwieg, Ann S

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Whole genome sequencing to characterize luminal-type breast cancer von Ellis, Matthew James, Ding, Li, Shen, Dong, Luo, Jingqin, Suman, Vera J., Goiffon, Reece J., Wallis, John W., Goldstein, Theodore C., Chen, Ken, Allred, Donald Craig, Leitch, A. Marilyn, Olson, John A., Ota, David M., Watson, Mark, Piwnica-Worms, David, Bose, Ron, Stuart, Joshua M., Wilson, Richard K., Hunt, Kelly, Mardis, Elaine

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A hyper-recombination mutation in S. cerevisiae identifies a novel eukaryotic topoisomerase von Wallis, John W., Chrebet, Gary, Brodsky, Gary, Rolfe, Mark, Rothstein, Rodney

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Clonal evolution in relapsed acutemyeloid leukaemia revealed by whole-genome sequencing von Ding, Li, Ley, Timothy J, Larson, David E, Miller, Christopher A, Koboldt, Daniel C, Welch, John S, Ritchey, Julie K, Young, Margaret A, Lamprecht, Tamara, McLellan, Michael D, McMichael, Joshua F, Wallis, John W, Lu, Charles, Shen, Dong, Harris, Christopher C, Dooling, David J, Fulton, Robert S, Fulton, Lucinda L, Chen, Ken, Schmidt, Heather, Kalicki-Veizer, Joelle, Magrini, Vincent J, Cook, Lisa, McGrath, Sean D, Vickery, Tammi L, Wendl, Michael C, Heath, Sharon, Watson, Mark A, Link, Daniel C, Tomasson, Michael H, Shannon, William D, Payton, Jacqueline E, Kulkarni, Shashikant, Westervelt, Peter, Walter, Matthew J, Graubert, Timothy A, Mardis, Elaine R, Wilson, Richard K, DiPersio, John F

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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing von Ding, Li, Ley, Timothy J, Larson, David E, Miller, Christopher A, Koboldt, Daniel C, Welch, John S, Ritchey, Julie K, Young, Margaret A, Lamprecht, Tamara, McLellan, Michael D, McMichael, Joshua F, Wallis, John W, Lu, Charles, Shen, Dong, Harris, Christopher C, Dooling, David J, Fulton, Robert S, Fulton, Lucinda L, Chen, Ken, Schmidt, Heather, Kalicki-Veizer, Joelle, Magrini, Vincent J, Cook, Lisa, McGrath, Sean D, Vickery, Tammi L, Wendl, Michael C, Heath, Sharon, Watson, Mark A, Link, Daniel C, Tomasson, Michael H, Shannon, William D, Payton, Jacqueline E, Kulkarni, Shashikant, Westervelt, Peter, Walter, Matthew J, Graubert, Timothy A, Mardis, Elaine R, Wilson, Richard K, DiPersio, John F

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Abstract LB-423: Whole genome comparisons of pre- and post- aromatase inhibitor treatment in estrogen receptor positive breast cancer von Ellis, Matthew J., Li, Ding, Shen, Dong, Luo, Jingqin, Suman, Vera J., Wallis, John W., Van Tine, Brian A., Hoog, Jeremy, Crowder, Robert J., Snider, Jacqueline E., Ballman, Karla, Chen, Ken, Koboldt, Daniel C., Schierding, William S., McMichael, Joshua F., Miller, Christopher A., Kandoth, Cyriac, Lu, Charles, Harris, Christopher C., McLellan, Michael D., Wendl, Michael C., DeSchryver, Katherine, Allred, D. Craig, Esserman, Laura, Unzeitig, Gary, Margenthaler, Julie, Babiera, G.V., Marcom, P. Kelly, Guenther, J.M., Leitch, Marilyn, Hunt, Kelly, Olson, John, Tao, Yu, Fulton, Lucinda L., Fulton, Robert S., Harrison, Michelle, Oberkfell, Ben, Du, Feiyu, Demeter, Ryan, Griffith, Malachi, Vickery, Tammi L., McDonald, Sandra A., Watson, Mark, Dooling, David J., Ota, David, Chang, Li-Wei, Bose, Ron, Ley, Timothy J., Wilson, Richard K., Mardis, Elaine R.

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Yeast histone H2B containing large amino terminus deletions can function in vivo von Wallis, John W., Rykowski, Mary, Grunstein, Michael

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Histone H2B genes of yeast encode two different proteins von Wallis, John W., Hereford, Lynna, Grunstein, Michael

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