KEGGtranslator: visualizing and converting the KEGG PATHWAY database to various formats von Wrzodek, Clemens, Dräger, Andreas, Zell, Andreas

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ZBIT Bioinformatics Toolbox: A Web-Platform for Systems Biology and Expression Data Analysis von Römer, Michael, Eichner, Johannes, Dräger, Andreas, Wrzodek, Clemens, Wrzodek, Finja, Zell, Andreas

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Integrated enrichment analysis and pathway-centered visualization of metabolomics, proteomics, transcriptomics, and genomics data by using the InCroMAP software von Eichner, Johannes, Rosenbaum, Lars, Wrzodek, Clemens, Häring, Hans-Ulrich, Zell, Andreas, Lehmann, Rainer

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Path2Models: large-scale generation of computational models from biochemical pathway maps von Büchel, Finja, Rodriguez, Nicolas, Swainston, Neil, Wrzodek, Clemens, Czauderna, Tobias, Keller, Roland, Mittag, Florian, Schubert, Michael, Glont, Mihai, Golebiewski, Martin, van Iersel, Martijn, Keating, Sarah, Rall, Matthias, Wybrow, Michael, Hermjakob, Henning, Hucka, Michael, Kell, Douglas B, Müller, Wolfgang, Mendes, Pedro, Zell, Andreas, Chaouiya, Claudine, Saez-Rodriguez, Julio, Schreiber, Falk, Laibe, Camille, Dräger, Andreas, Le Novère, Nicolas

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Prediction of polyspecificity from antibody sequence data by machine learning von Éliás, Szabolcs, Wrzodek, Clemens, Deane, Charlotte M, Tissot, Alain C, Klostermann, Stefan, Ros, Francesca

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TFpredict and SABINE: sequence-based prediction of structural and functional characteristics of transcription factors von Eichner, Johannes, Topf, Florian, Dräger, Andreas, Wrzodek, Clemens, Wanke, Dierk, Zell, Andreas

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Evaluation of toxicogenomics approaches for assessing the risk of nongenotoxic carcinogenicity in rat liver von Eichner, Johannes, Wrzodek, Clemens, Römer, Michael, Ellinger-Ziegelbauer, Heidrun, Zell, Andreas

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Linking the epigenome to the genome: correlation of different features to DNA methylation of CpG islands von Wrzodek, Clemens, Büchel, Finja, Hinselmann, Georg, Eichner, Johannes, Mittag, Florian, Zell, Andreas

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Identification of Dlk1-Dio3 imprinted gene cluster noncoding RNAs as novel candidate biomarkers for liver tumor promotion von Lempiäinen, Harri, Couttet, Philippe, Bolognani, Federico, Müller, Arne, Dubost, Valérie, Luisier, Raphaëlle, Del Rio Espinola, Alberto, Vitry, Veronique, Unterberger, Elif B, Thomson, John P, Treindl, Fridolin, Metzger, Ute, Wrzodek, Clemens, Hahne, Florian, Zollinger, Tulipan, Brasa, Sarah, Kalteis, Magdalena, Marcellin, Magali, Giudicelli, Fanny, Braeuning, Albert, Morawiec, Laurent, Zamurovic, Natasa, Längle, Ulrich, Scheer, Nico, Schübeler, Dirk, Goodman, Jay, Chibout, Salah-Dine, Marlowe, Jennifer, Theil, Diethilde, Heard, David J, Grenet, Olivier, Zell, Andreas, Templin, Markus F, Meehan, Richard R, Wolf, Roland C, Elcombe, Clifford R, Schwarz, Michael, Moulin, Pierre, Terranova, Rémi, Moggs, Jonathan G

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A toxicogenomic approach for the prediction of murine hepatocarcinogenesis using ensemble feature selection von Eichner, Johannes, Kossler, Nadine, Wrzodek, Clemens, Kalkuhl, Arno, Bach Toft, Dorthe, Ostenfeldt, Nina, Richard, Virgile, Zell, Andreas

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Integrative pathway-based approach for genome-wide association studies: identification of new pathways for rheumatoid arthritis and type 1 diabetes von Büchel, Finja, Mittag, Florian, Wrzodek, Clemens, Zell, Andreas, Gasser, Thomas, Sharma, Manu

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Qualitative translation of relations from BioPAX to SBML qual von BÜCHEL, Finja, WRZODEK, Clemens, MITTAG, Florian, DRÄGER, Andreas, EICHNER, Johannes, RODRIGUEZ, Nicolas, LE NOVERE, Nicolas, ZELL, Andreas

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SBML Level 3: an extensible format for the exchange and reuse of biological models von Waltemath, Dagmar, König, Matthias, Zhang, Fengkai, Dräger, Andreas, Chaouiya, Claudine, Bergmann, Frank T, Finney, Andrew, Helikar, Tomáš, Hoops, Stefan, Malik‐Sheriff, Rahuman S, Moraru, Ion I, Naldi, Aurélien, Olivier, Brett G, Sahle, Sven, Smith, Lucian P, Swat, Maciej J, Watanabe, Leandro, Wilkinson, Darren J, Begley, Kimberly, Faeder, James R, Gómez, Harold F, Inagaki, Yuichiro, Lister, Allyson L, Lucio, Daniel, Mjolsness, Eric, Proctor, Carole J, Raman, Karthik, Rodriguez, Nicolas, Shaffer, Clifford A, Shapiro, Bruce E, Stelling, Joerg, Swainston, Neil, Tanimura, Naoki, Wagner, John, Meier‐Schellersheim, Martin, Sauro, Herbert M, Palsson, Bernhard, Kitano, Hiroaki, Funahashi, Akira, Hermjakob, Henning, Doyle, John C, Hucka, Michael, Adams, Richard R, Allen, Nicholas A, Angermann, Bastian R, Antoniotti, Marco, Courtot, Mélanie, Cox, Chris D, Dalle Pezze, Piero, Demir, Emek, Denney, William S, Dharuri, Harish, Dorier, Julien, Drasdo, Dirk, Ebrahim, Ali, Eichner, Johannes, Elf, Johan, Flamm, Christoph, Fleming, Ronan MT, Fröhlich, Martina, Gonçalves, Emanuel, Golebiewski, Martin, Grabski, Hovakim, Heavner, Benjamin D, de Jong, Hidde, Juty, Nick, Karp, Peter D, Kiselev, Ilya, Klipp, Edda, Knüpfer, Christian, Kolpakov, Fedor, Lawless, Conor, Li, Lu, Machne, Rainer, Mendes, Pedro, Mittag, Florian, Monteiro, Pedro T, Natarajan, Kedar Nath, Nguyen, Tramy, Pfau, Thomas, Phair, Robert D, Radivoyevitch, Tomas, Rohwer, Johann M, Saez‐Rodriguez, Julio, Scharm, Martin, Schmidt, Henning, Schreiber, Falk, Schubert, Michael, Sealfon, Stuart C, Soliman, Sylvain, Stefan, Melanie I, Sullivan, Devin P, Takahashi, Koichi, Teusink, Bas, Tolnay, David, Vazirabad, Ibrahim, von Kamp, Axel, Wittig, Ulrike, Wrzodek, Clemens, Zucker, Jeremy

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Pathway-based visualization of cross-platform microarray datasets von WRZODEK, Clemens, EICHNER, Johannes, ZELL, Andreas

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InCroMAP: integrated analysis of cross-platform microarray and pathway data von Wrzodek, Clemens, Eichner, Johannes, Büchel, Finja, Zell, Andreas

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Precise generation of systems biology models from KEGG pathways von Wrzodek, Clemens, Büchel, Finja, Ruff, Manuel, Dräger, Andreas, Zell, Andreas

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JSBML: a flexible Java library for working with SBML von Dräger, Andreas, Rodriguez, Nicolas, Dumousseau, Marine, Dörr, Alexander, Wrzodek, Clemens, Le Novère, Nicolas, Zell, Andreas, Hucka, Michael

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ProDGe: investigating protein-protein interactions at the domain level von Büchel, Finja, Wrzodek, Clemens, Mittag, Florian, Dräger, Andreas, Schröder, Adrian, Zell, Andreas

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JSBML 1.0: providing a smorgasbord of options to encode systems biology models von Rodriguez, Nicolas, Thomas, Alex, Watanabe, Leandro, Vazirabad, Ibrahim Y, Kofia, Victor, Gómez, Harold F, Mittag, Florian, Matthes, Jakob, Rudolph, Jan, Wrzodek, Finja, Netz, Eugen, Diamantikos, Alexander, Eichner, Johannes, Keller, Roland, Wrzodek, Clemens, Fröhlich, Sebastian, Lewis, Nathan E, Myers, Chris J, Le Novère, Nicolas, Palsson, Bernhard Ø, Hucka, Michael, Dräger, Andreas

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JSBML: a flexible and entirely Java-based library for working with SBML von Jouraku, Akiya, Le Novère, Nicolas, Zell, Andreas, Hucka, Michael, Rodriguez, Nicolas, Dumousseau, Marine, Dräger, Andreas, Wrzodek, Clemens, Dörr, Alexander, Keating, Sarah

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