COG database update: focus on microbial diversity, model organisms, and widespread pathogens von Galperin, Michael Y, Wolf, Yuri I, Makarova, Kira S, Vera Alvarez, Roberto, Landsman, David, Koonin, Eugene V

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Global Organization and Proposed Megataxonomy of the Virus World von Koonin, Eugene V, Dolja, Valerian V, Krupovic, Mart, Varsani, Arvind, Wolf, Yuri I, Yutin, Natalya, Zerbini, F Murilo, Kuhn, Jens H

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Genomic determinants of pathogenicity in SARS-CoV-2 and other human coronaviruses von Gussow, Ayal B., Auslander, Noam, Faure, Guilhem, Wolf, Yuri I., Zhang, Feng, Koonin, Eugene V.

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Origins and Evolution of the Global RNA Virome von Wolf, Yuri I, Kazlauskas, Darius, Iranzo, Jaime, Lucía-Sanz, Adriana, Kuhn, Jens H, Krupovic, Mart, Dolja, Valerian V, Koonin, Eugene V

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Seeker: alignment-free identification of bacteriophage genomes by deep learning von Auslander, Noam, Gussow, Ayal B, Benler, Sean, Wolf, Yuri I, Koonin, Eugene V

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Phylogenomics of prokaryotic ribosomal proteins von Yutin, Natalya, Puigbò, Pere, Koonin, Eugene V, Wolf, Yuri I

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Expanded microbial genome coverage and improved protein family annotation in the COG database von Galperin, Michael Y, Makarova, Kira S, Wolf, Yuri I, Koonin, Eugene V

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Ancient Gene Capture and Recent Gene Loss Shape the Evolution of Orthopoxvirus-Host Interaction Genes von Senkevich, Tatiana G, Yutin, Natalya, Wolf, Yuri I, Koonin, Eugene V, Moss, Bernard

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Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems von Shmakov, Sergey, Abudayyeh, Omar O., Makarova, Kira S., Wolf, Yuri I., Gootenberg, Jonathan S., Semenova, Ekaterina, Minakhin, Leonid, Joung, Julia, Konermann, Silvana, Severinov, Konstantin, Zhang, Feng, Koonin, Eugene V.

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Diverse enzymatic activities mediate antiviral immunity in prokaryotes von Gao, Linyi, Altae-Tran, Han, Böhning, Francisca, Makarova, Kira S, Segel, Michael, Schmid-Burgk, Jonathan L, Koob, Jeremy, Wolf, Yuri I, Koonin, Eugene V, Zhang, Feng

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Genome reduction as the dominant mode of evolution von Wolf, Yuri I., Koonin, Eugene V.

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Gene gain and loss push prokaryotes beyond the homologous recombination barrier and accelerate genome sequence divergence von Iranzo, Jaime, Wolf, Yuri I., Koonin, Eugene V., Sela, Itamar

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Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants von Makarova, Kira S., Wolf, Yuri I., Iranzo, Jaime, Shmakov, Sergey A., Alkhnbashi, Omer S., Brouns, Stan J. J., Charpentier, Emmanuelle, Cheng, David, Haft, Daniel H., Horvath, Philippe, Moineau, Sylvain, Mojica, Francisco J. M., Scott, David, Shah, Shiraz A., Siksnys, Virginijus, Terns, Michael P., Venclovas, Česlovas, White, Malcolm F., Yakunin, Alexander F., Yan, Winston, Zhang, Feng, Garrett, Roger A., Backofen, Rolf, van der Oost, John, Barrangou, Rodolphe, Koonin, Eugene V.

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Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features von Yutin, Natalya, Benler, Sean, Shmakov, Sergei A., Wolf, Yuri I., Tolstoy, Igor, Rayko, Mike, Antipov, Dmitry, Pevzner, Pavel A., Koonin, Eugene V.

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Interplay between DNA damage repair and apoptosis shapes cancer evolution through aneuploidy and microsatellite instability von Auslander, Noam, Wolf, Yuri I., Koonin, Eugene V.

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Evolutionary Genomics of Defense Systems in Archaea and Bacteria von Koonin, Eugene V, Makarova, Kira S, Wolf, Yuri I

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Ongoing global and regional adaptive evolution of SARS-CoV-2 von Rochman, Nash D., Wolf, Yuri I., Faure, Guilhem, Mutz, Pascal, Zhang, Feng, Koonin, Eugene V.

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Small Proteins Can No Longer Be Ignored von Storz, Gisela, Wolf, Yuri I, Ramamurthi, Kumaran S

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Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis von Shmakov, Sergey A., Makarova, Kira S., Wolf, Yuri I., Severinov, Konstantin V., Koonin, Eugene V.

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Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome von Wolf, Yuri I., Silas, Sukrit, Wang, Yongjie, Wu, Shuang, Bocek, Michael, Kazlauskas, Darius, Krupovic, Mart, Fire, Andrew, Dolja, Valerian V., Koonin, Eugene V.

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