Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays von Hoofnagle, Andrew N, Whiteaker, Jeffrey R, Carr, Steven A, Kuhn, Eric, Liu, Tao, Massoni, Sam A, Thomas, Stefani N, Townsend, R Reid, Zimmerman, Lisa J, Boja, Emily, Chen, Jing, Crimmins, Daniel L, Davies, Sherri R, Gao, Yuqian, Hiltke, Tara R, Ketchum, Karen A, Kinsinger, Christopher R, Mesri, Mehdi, Meyer, Matthew R, Qian, Wei-Jun, Schoenherr, Regine M, Scott, Mitchell G, Shi, Tujin, Whiteley, Gordon R, Wrobel, John A, Wu, Chaochao, Ackermann, Brad L, Aebersold, Ruedi, Barnidge, David R, Bunk, David M, Clarke, Nigel, Fishman, Jordan B, Grant, Russ P, Kusebauch, Ulrike, Kushnir, Mark M, Lowenthal, Mark S, Moritz, Robert L, Neubert, Hendrik, Patterson, Scott D, Rockwood, Alan L, Rogers, John, Singh, Ravinder J, Van Eyk, Jennifer E, Wong, Steven H, Zhang, Shucha, Chan, Daniel W, Chen, Xian, Ellis, Matthew J, Liebler, Daniel C, Rodland, Karin D, Rodriguez, Henry, Smith, Richard D, Zhang, Zhen, Zhang, Hui, Paulovich, Amanda G

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Targeting RAS-driven human cancer cells with antibodies to upregulated and essential cell-surface proteins von Martinko, Alexander J, Truillet, Charles, Julien, Olivier, Diaz, Juan E, Horlbeck, Max A, Whiteley, Gordon, Blonder, Josip, Weissman, Jonathan S, Bandyopadhyay, Sourav, Evans, Michael J, Wells, James A

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Anti-Peptide Monoclonal Antibodies Generated for Immuno-Multiple Reaction Monitoring-Mass Spectrometry Assays Have a High Probability of Supporting Western blot and ELISA[S] von Schoenherr, Regine M., Saul, Richard G., Whiteaker, Jeffrey R., Yan, Ping, Whiteley, Gordon R., Paulovich, Amanda G.

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Evaluation of the selectivity and sensitivity of isoform- and mutation-specific RAS antibodies von Waters, Andrew M, Ozkan-Dagliyan, Irem, Vaseva, Angelina V, Fer, Nicole, Strathern, Leslie A, Hobbs, G Aaron, Tessier-Cloutier, Basile, Gillette, William K, Bagni, Rachel, Whiteley, Gordon R, Hartley, James L, McCormick, Frank, Cox, Adrienne D, Houghton, Peter J, Huntsman, David G, Philips, Mark R, Der, Channing J

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Comparison of Eight Technologies to Determine Genotype at the UGT1A1 (TA) n Repeat Polymorphism: Potential Clinical Consequences of Genotyping Errors? von Sissung, Tristan M, Barbier, Roberto H, Price, Douglas K, Plona, Teri M, Pike, Kristen M, Mellott, Stephanie D, Baugher, Ryan N, Whiteley, Gordon R, Soppet, Daniel R, Venzon, David, Berman, Arlene, Rajan, Arun, Giaccone, Giuseppe, Meltzer, Paul, Figg, William D

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Integrated Proteomic and Glycoproteomic Characterization of Human High-Grade Serous Ovarian Carcinoma von Hu, Yingwei, Pan, Jianbo, Shah, Punit, Ao, Minghui, Thomas, Stefani N., Liu, Yang, Chen, Lijun, Schnaubelt, Michael, Clark, David J., Rodriguez, Henry, Boja, Emily S., Hiltke, Tara, Kinsinger, Christopher R., Rodland, Karin D., Li, Qing Kay, Qian, Jiang, Zhang, Zhen, Chan, Daniel W., Zhang, Hui, Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Zhang, Bing, Mani, D.R., Liebler, Daniel C., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Shih, Ie-Ming, Bavarva, Jasmin, McDermott, Jason E., Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Ding, Li, Hannick, Linda, Zimmerman, Lisa J., Watson, Mark, Thiagarajan, Mathangi, Ellis, Matthew J.C., Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Smith, Richard D., Rivers, Robert C., Slebos, Robert J.C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Liu, Tao, Chen, Xian, Zhao, Yingming, Wang, Yue, Shi, Zhiao

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Detection and Quantitation of Endogenous Membrane-Bound RAS Proteins and KRAS Mutants in Cancer Cell Lines Using 1D-SDS-PAGE LC–MS2 von Kaczmarczyk, Jan A., Whiteley, Gordon R., Blonder, Josip

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High-Resolution Serum Proteomic Profiling of Alzheimer Disease Samples Reveals Disease-Specific, Carrier-Protein-Bound Mass Signatures von Lopez, Mary F, Mikulskis, Alvydas, Kuzdzal, Scott, Bennett, David A, Kelly, Jeremiah, Golenko, Eva, DiCesare, Joseph, Denoyer, Eric, Patton, Wayne F, Ediger, Richard, Sapp, Lisa, Ziegert, Tillmann, Lynch, Christopher, Kramer, Susan, Whiteley, Gordon R, Wall, Michael R, Mannion, David P, della Cioppa, Guy, Rakitan, John S, Wolfe, Gershon M

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Novel antibody reagents for characterization of drug- and tumor microenvironment-induced changes in epithelial-mesenchymal transition and cancer stem cells von Navas, Tony, Pfister, Thomas D, Colantonio, Simona, Aziz, Amina, Dieckman, Lynda, Saul, Richard G, Kaczmarczyk, Jan, Borgel, Suzanne, Alcoser, Sergio Y, Hollingshead, Melinda G, Lee, Young H, Bottaro, Donald P, Hiltke, Tara, Whiteley, Gordon, Takebe, Naoko, Kinders, Robert J, Parchment, Ralph E, Tomaszewski, Joseph E, Doroshow, James H

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Direct molecular dissection of tumor parenchyma from tumor stroma in tumor xenograft using mass spectrometry-based glycoproteomics von Ye, Xiaoying, Luke, Brian T, Wei, Bih-Rong, Kaczmarczyk, Jan A, Loncarek, Jadranka, Dwyer, Jennifer E, Johann, Donald J, Saul, Richard G, Nissley, Dwight V, McCormick, Frank, Whiteley, Gordon R, Blonder, Josip

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A Novel, High-Throughput Workflow for Discovery and Identification of Serum Carrier Protein-Bound Peptide Biomarker Candidates in Ovarian Cancer Samples von Lopez, Mary F, Mikulskis, Alvydas, Kuzdzal, Scott, Golenko, Eva, Petricoin, Emanuel F., III, Liotta, Lance A, Patton, Wayne F, Whiteley, Gordon R, Rosenblatt, Kevin, Gurnani, Prem, Nandi, Animesh, Neill, Samuel, Cullen, Stuart, O'Gorman, Martin, Sarracino, David, Lynch, Christopher, Johnson, Andrew, Mckenzie, William, Fishman, David

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Targeted mass-spectrometry-based assays enable multiplex quantification of receptor tyrosine kinase, MAP kinase, and AKT signaling von Whiteaker, Jeffrey R., Sharma, Kanika, Hoffman, Melissa A., Kuhn, Eric, Zhao, Lei, Cocco, Alexandra R., Schoenherr, Regine M., Kennedy, Jacob J., Voytovich, Ulianna, Lin, Chenwei, Fang, Bin, Bowers, Kiah, Whiteley, Gordon, Colantonio, Simona, Bocik, William, Roberts, Rhonda, Hiltke, Tara, Boja, Emily, Rodriguez, Henry, McCormick, Frank, Holderfield, Matthew, Carr, Steven A., Koomen, John M., Paulovich, Amanda G.

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Serum proteomic analysis identifies a highly sensitive and specific discriminatory pattern in stage 1 breast cancer von Belluco, Claudio, Petricoin, Emanuel F, Mammano, Enzo, Facchiano, Francesco, Ross-Rucker, Sally, Nitti, Donato, Di Maggio, Cosimo, Liu, Chenwei, Lise, Mario, Liotta, Lance A, Whiteley, Gordon

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A dataset describing a suite of novel antibody reagents for the RAS signaling network von Schoenherr, Regine M., Huang, Dongqing, Voytovich, Uliana J., Ivey, Richard G., Kennedy, Jacob J., Saul, Richard G., Colantonio, Simona, Roberts, Rhonda R., Knotts, Joseph G., Kaczmarczyk, Jan A., Perry, Candice, Hewitt, Stephen M., Bocik, William, Whiteley, Gordon R., Hiltke, Tara, Boja, Emily S., Rodriguez, Henry, Whiteaker, Jeffrey R., Paulovich, Amanda G.

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Comparative proteomics of a model MCF10A-KRasG12V cell line reveals a distinct molecular signature of the KRasG12V cell surface von Ye, Xiaoying, Chan, King C, Waters, Andrew M, Bess, Matthew, Harned, Adam, Wei, Bih-Rong, Loncarek, Jadranka, Luke, Brian T, Orsburn, Benjamin C, Hollinger, Bradley D, Stephens, Robert M, Bagni, Rachel, Martinko, Alex, Wells, James A, Nissley, Dwight V, McCormick, Frank, Whiteley, Gordon, Blonder, Josip

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SELDI-TOF plasma profiles distinguish individuals in a protein C-deficient family with thrombotic episodes occuring before age 40 von Svensson, Annika M., Whiteley, Gordon R., Callas, Peter W., Bovill, Edwin G.

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Clinical Proteomics and Biomarker Discovery von JOHANN JR, DONALD J., MCGUIGAN, MICHAEL D., PATEL, AMIT R., TOMOV, STANIMIRE, ROSS, SALLY, CONRADS, THOMAS P., VEENSTRA, TIMOTHY D., FISHMAN, DAVID A., WHITELEY, GORDON R., PETRICOIN III, EMANUEL F., LIOTTA, LANCE A.

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Proteomic patterns for cancer diagnosis--promise and challenges von Whiteley, Gordon R

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Proteogenomic Analysis of Human Colon Cancer Reveals New Therapeutic Opportunities von Vasaikar, Suhas, Huang, Chen, Wang, Xiaojing, Petyuk, Vladislav A., Savage, Sara R., Wen, Bo, Dou, Yongchao, Zhang, Yun, Shi, Zhiao, Arshad, Osama A., Gritsenko, Marina A., Zimmerman, Lisa J., McDermott, Jason E., Clauss, Therese R., Moore, Ronald J., Zhao, Rui, Monroe, Matthew E., Wang, Yi-Ting, Chambers, Matthew C., Slebos, Robbert J.C., Lau, Ken S., Mo, Qianxing, Ding, Li, Ellis, Matthew, Thiagarajan, Mathangi, Kinsinger, Christopher R., Rodriguez, Henry, Smith, Richard D., Rodland, Karin D., Liebler, Daniel C., Liu, Tao, Zhang, Bing, Pandey, Akhilesh, Paulovich, Amanda, Hoofnagle, Andrew, Mani, D.R., Chan, Daniel W., Ransohoff, David F., Fenyo, David, Tabb, David L., Levine, Douglas A., Boja, Emily S., Kuhn, Eric, White, Forest M., Whiteley, Gordon A., Zhu, Heng, Zhang, Hui, Shih, Ie-Ming, Bavarva, Jasmin, Whiteaker, Jeffrey, Ketchum, Karen A., Clauser, Karl R., Ruggles, Kelly, Elburn, Kimberly, Hannick, Linda, Watson, Mark, Oberti, Mauricio, Mesri, Mehdi, Sanders, Melinda E., Borucki, Melissa, Gillette, Michael A., Snyder, Michael, Edwards, Nathan J., Vatanian, Negin, Rudnick, Paul A., McGarvey, Peter B., Mertins, Philip, Townsend, R. Reid, Thangudu, Ratna R., Rivers, Robert C., Payne, Samuel H., Davies, Sherri R., Cai, Shuang, Stein, Stephen E., Carr, Steven A., Skates, Steven J., Madhavan, Subha, Hiltke, Tara, Chen, Xian, Zhao, Yingming, Wang, Yue, Zhang, Zhen

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Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy von Krug, Karsten, Jaehnig, Eric J., Satpathy, Shankha, Blumenberg, Lili, Karpova, Alla, Anurag, Meenakshi, Miles, George, Mertins, Philipp, Geffen, Yifat, Tang, Lauren C., Heiman, David I., Cao, Song, Maruvka, Yosef E., Lei, Jonathan T., Huang, Chen, Kothadia, Ramani B., Colaprico, Antonio, Birger, Chet, Wang, Jarey, Dou, Yongchao, Wen, Bo, Shi, Zhiao, Liao, Yuxing, Wiznerowicz, Maciej, Wyczalkowski, Matthew A., Chen, Xi Steven, Kennedy, Jacob J., Paulovich, Amanda G., Thiagarajan, Mathangi, Kinsinger, Christopher R., Hiltke, Tara, Boja, Emily S., Mesri, Mehdi, Robles, Ana I., Rodriguez, Henry, Westbrook, Thomas F., Ding, Li, Getz, Gad, Clauser, Karl R., Fenyö, David, Ruggles, Kelly V., Zhang, Bing, Mani, D.R., Carr, Steven A., Ellis, Matthew J., Gillette, Michael A., Avanessian, Shayan C., Cai, Shuang, Chan, Daniel, Chen, Xian, Edwards, Nathan J., Hoofnagle, Andrew N., Kane, M. Harry, Ketchum, Karen A., Kuhn, Eric, Levine, Douglas A., Li, Shunqiang, Liebler, Daniel C., Liu, Tao, Luo, Jingqin, Madhavan, Subha, Maher, Chris, McDermott, Jason E., McGarvey, Peter B., Oberti, Mauricio, Pandey, Akhilesh, Payne, Samuel H., Ransohoff, David F., Rivers, Robert C., Rodland, Karin D., Rudnick, Paul, Sanders, Melinda E., Shaw, Kenna M., Shih, Ie-Ming, Slebos, Robbert J.C., Smith, Richard D., Snyder, Michael, Stein, Stephen E., Tabb, David L., Thangudu, Ratna R., Thomas, Stefani, Wang, Yue, White, Forest M., Whiteaker, Jeffrey R., Whiteley, Gordon A., Zhang, Hui, Zhang, Zhen, Zhao, Yingming, Zhu, Heng, Zimmerman, Lisa J.

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