Dynamics of Tumor and Immune Responses during Immune Checkpoint Blockade in Non-Small Cell Lung Cancer von Anagnostou, Valsamo, Forde, Patrick M, White, James R, Niknafs, Noushin, Hruban, Carolyn, Naidoo, Jarushka, Marrone, Kristen, Sivakumar, I K Ashok, Bruhm, Daniel C, Rosner, Samuel, Phallen, Jillian, Leal, Alessandro, Adleff, Vilmos, Smith, Kellie N, Cottrell, Tricia R, Rhymee, Lamia, Palsgrove, Doreen N, Hann, Christine L, Levy, Benjamin, Feliciano, Josephine, Georgiades, Christos, Verde, Franco, Illei, Peter, Li, Qing Kay, Gabrielson, Edward, Brock, Malcolm V, Isbell, James M, Sauter, Jennifer L, Taube, Janis, Scharpf, Robert B, Karchin, Rachel, Pardoll, Drew M, Chaft, Jamie E, Hellmann, Matthew D, Brahmer, Julie R, Velculescu, Victor E

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CloVR: a virtual machine for automated and portable sequence analysis from the desktop using cloud computing von Angiuoli, Samuel V, Matalka, Malcolm, Gussman, Aaron, Galens, Kevin, Vangala, Mahesh, Riley, David R, Arze, Cesar, White, James R, White, Owen, Fricke, W Florian

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Proof of concept of microbiome-metabolome analysis and delayed gluten exposure on celiac disease autoimmunity in genetically at-risk infants von Sellitto, Maria, Bai, Guoyun, Serena, Gloria, Fricke, W Florian, Sturgeon, Craig, Gajer, Pawel, White, James R, Koenig, Sara S K, Sakamoto, Joyce, Boothe, Dustin, Gicquelais, Rachel, Kryszak, Deborah, Puppa, Elaine, Catassi, Carlo, Ravel, Jacques, Fasano, Alessio

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Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation von Banerjee, Amrita, Herring, Charles A., Chen, Bob, Kim, Hyeyon, Simmons, Alan J., Southard-Smith, Austin N., Allaman, Margaret M., White, James R., Macedonia, Mary C., Mckinley, Eliot T., Ramirez-Solano, Marisol A., Scoville, Elizabeth A., Liu, Qi, Wilson, Keith T., Coffey, Robert J., Washington, M. Kay, Goettel, Jeremy A., Lau, Ken S.

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Interaction between the microbiome and TP53 in human lung cancer von Greathouse, K Leigh, White, James R, Vargas, Ashely J, Bliskovsky, Valery V, Beck, Jessica A, von Muhlinen, Natalia, Polley, Eric C, Bowman, Elise D, Khan, Mohammed A, Robles, Ana I, Cooks, Tomer, Ryan, Bríd M, Padgett, Noah, Dzutsev, Amiran H, Trinchieri, Giorgio, Pineda, Marbin A, Bilke, Sven, Meltzer, Paul S, Hokenstad, Alexis N, Stickrod, Tricia M, Walther-Antonio, Marina R, Earl, Joshua P, Mell, Joshua C, Krol, Jaroslaw E, Balashov, Sergey V, Bhat, Archana S, Ehrlich, Garth D, Valm, Alex, Deming, Clayton, Conlan, Sean, Oh, Julia, Segre, Julie A, Harris, Curtis C

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Baseline survey of the anatomical microbial ecology of an important food plant: Solanum lycopersicum (tomato) von Ottesen, Andrea R, González Peña, Antonio, White, James R, Pettengill, James B, Li, Cong, Allard, Sarah, Rideout, Steven, Allard, Marc, Hill, Thomas, Evans, Peter, Strain, Errol, Musser, Steven, Knight, Rob, Brown, Eric

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Human colon mucosal biofilms from healthy or colon cancer hosts are carcinogenic von Tomkovich, Sarah, Dejea, Christine M, Winglee, Kathryn, Drewes, Julia L, Chung, Liam, Housseau, Franck, Pope, Jillian L, Gauthier, Josee, Sun, Xiaolun, Mühlbauer, Marcus, Liu, Xiuli, Fathi, Payam, Anders, Robert A, Besharati, Sepideh, Perez-Chanona, Ernesto, Yang, Ye, Ding, Hua, Wu, Xinqun, Wu, Shaoguang, White, James R, Gharaibeh, Raad Z, Fodor, Anthony A, Wang, Hao, Pardoll, Drew M, Jobin, Christian, Sears, Cynthia L

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Microbiota organization is a distinct feature of proximal colorectal cancers von Dejea, Christine M., Wick, Elizabeth C., Hechenbleikner, Elizabeth M., White, James R., Welch, Jessica L. Mark, Rossetti, Blair J., Peterson, Scott N., Snesrud, Erik C., Borisy, Gary G., Lazarev, Mark, Stein, Ellen, Vadivelu, Jamuna, Roslani, April C., Malik, Ausuma A., Wanyiri, Jane W., Goh, Khean L., Thevambiga, Iyadorai, Fu, Kai, Wan, Fengyi, Llosa, Nicolas, Housseau, Franck, Romans, Katharine, Wu, XinQun, McAllister, Florencia M., Wu, Shaoguang, Vogelstein, Bert, Kinzler, Kenneth W., Pardoll, Drew M., Sears, Cynthia L.

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Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak von Ottesen, Andrea, Ramachandran, Padmini, Reed, Elizabeth, White, James R, Hasan, Nur, Subramanian, Poorani, Ryan, Gina, Jarvis, Karen, Grim, Christopher, Daquiqan, Ninalynn, Hanes, Darcy, Allard, Marc, Colwell, Rita, Brown, Eric, Chen, Yi

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Metabolism Links Bacterial Biofilms and Colon Carcinogenesis von Johnson, Caroline H., Dejea, Christine M., Edler, David, Hoang, Linh T., Santidrian, Antonio F., Felding, Brunhilde H., Ivanisevic, Julijana, Cho, Kevin, Wick, Elizabeth C., Hechenbleikner, Elizabeth M., Uritboonthai, Winnie, Goetz, Laura, Casero, Robert A., Pardoll, Drew M., White, James R., Patti, Gary J., Sears, Cynthia L., Siuzdak, Gary

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Batch effects removal for microbiome data via conditional quantile regression von Ling, Wodan, Lu, Jiuyao, Zhao, Ni, Lulla, Anju, Plantinga, Anna M., Fu, Weijia, Zhang, Angela, Liu, Hongjiao, Song, Hoseung, Li, Zhigang, Chen, Jun, Randolph, Timothy W., Koay, Wei Li A., White, James R., Launer, Lenore J., Fodor, Anthony A., Meyer, Katie A., Wu, Michael C.

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Tadalafil Therapy for Pulmonary Arterial Hypertension von GALIE, Nazzareno, BRUNDAGE, Bruce H, FRUMKIN, Lyn, BARST, Robyn J, GHOFRANI, Hossein A, OUDIZ, Ronald J, SIMONNEAU, Gerald, SAFDAR, Zeenat, SHAPIRO, Shelley, WHITE, R. James, CHAN, Melanie, BEARDSWORTH, Anthony

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The impact of a pulmonary embolism response team on the efficiency of patient care in the emergency department von Wright, Colin, Elbadawi, Ayman, Chen, Yu Lin, Patel, Dhwani, Mazzillo, Justin, Acquisto, Nicole, Groth, Christine, Van Galen, Joseph, Delehanty, Joseph, Pietropaoli, Anthony, Trawick, David, James White, R., Cameron, Pamela, Gosev, Igor, Barrus, Bryan, Kumar, Neil G., Cameron, Scott J.

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Genome-wide mutational signatures in low-coverage whole genome sequencing of cell-free DNA von Wan, Jonathan C. M., Stephens, Dennis, Luo, Lingqi, White, James R., Stewart, Caitlin M., Rousseau, Benoît, Tsui, Dana W. Y., Diaz, Luis A.

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Novel Analysis of the Oral Treprostinil Combination Therapy Trial Data von White, R James, Rao, Youlan

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Composition of gastrointestinal microbiota in association with treatment response in individuals with metastatic castrate resistant prostate cancer progressing on enzalutamide and... von Peiffer, Lauren B., White, James R., Jones, Carli B., Slottke, Rachel E., Ernst, Sarah E., Moran, Amy E., Graff, Julie N., Sfanos, Karen S.

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Peak steps: Capacity for activity improves after adding approved therapy in pulmonary arterial hypertension von Lachant, Daniel, Light, Allison, Lachant, Michael, Annis, Jeffrey, Hemnes, Anna, Brittain, Evan, White, R James

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High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia von Drewes, Julia L., White, James R., Dejea, Christine M., Fathi, Payam, Iyadorai, Thevambiga, Vadivelu, Jamuna, Roslani, April C., Wick, Elizabeth C., Mongodin, Emmanuel F., Loke, Mun Fai, Thulasi, Kumar, Gan, Han Ming, Goh, Khean Lee, Chong, Hoong Yin, Kumar, Sandip, Wanyiri, Jane W., Sears, Cynthia L.

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Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities von Checinska, Aleksandra, Probst, Alexander J, Vaishampayan, Parag, White, James R, Kumar, Deepika, Stepanov, Victor G, Fox, George E, Nilsson, Henrik R, Pierson, Duane L, Perry, Jay, Venkateswaran, Kasthuri

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A Uniform Computational Approach Improved on Existing Pipelines to Reveal Microbiome Biomarkers of Nonresponse to Immune Checkpoint Inhibitors von Shaikh, Fyza Y., White, James R., Gills, Joell J., Hakozaki, Taiki, Richard, Corentin, Routy, Bertrand, Okuma, Yusuke, Usyk, Mykhaylo, Pandey, Abhishek, Weber, Jeffrey S., Ahn, Jiyoung, Lipson, Evan J., Naidoo, Jarushka, Pardoll, Drew M., Sears, Cynthia L.

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