MSIsensor: microsatellite instability detection using paired tumor-normal sequence data von Niu, Beifang, Ye, Kai, Zhang, Qunyuan, Lu, Charles, Xie, Mingchao, McLellan, Michael D, Wendl, Michael C, Ding, Li

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Mutational landscape and significance across 12 major cancer types von Kandoth, Cyriac, McLellan, Michael D., Vandin, Fabio, Ye, Kai, Niu, Beifang, Lu, Charles, Xie, Mingchao, Zhang, Qunyuan, McMichael, Joshua F., Wyczalkowski, Matthew A., Leiserson, Mark D. M., Miller, Christopher A., Welch, John S., Walter, Matthew J., Wendl, Michael C., Ley, Timothy J., Wilson, Richard K., Raphael, Benjamin J., Ding, Li

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Expanding the computational toolbox for mining cancer genomes von Ding, Li, Wendl, Michael C., McMichael, Joshua F., Raphael, Benjamin J.

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MuSiC: identifying mutational significance in cancer genomes von Dees, Nathan D, Zhang, Qunyuan, Kandoth, Cyriac, Wendl, Michael C, Schierding, William, Koboldt, Daniel C, Mooney, Thomas B, Callaway, Matthew B, Dooling, David, Mardis, Elaine R, Wilson, Richard K, Ding, Li

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Tumor Evolution in Two Patients with Basal-like Breast Cancer: A Retrospective Genomics Study of Multiple Metastases von Hoadley, Katherine A, Siegel, Marni B, Kanchi, Krishna L, Miller, Christopher A, Ding, Li, Zhao, Wei, He, Xiaping, Parker, Joel S, Wendl, Michael C, Fulton, Robert S, Demeter, Ryan T, Wilson, Richard K, Carey, Lisa A, Perou, Charles M, Mardis, Elaine R

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Age-related mutations associated with clonal hematopoietic expansion and malignancies von Xie, Mingchao, Lu, Charles, Wang, Jiayin, McLellan, Michael D, Johnson, Kimberly J, Wendl, Michael C, McMichael, Joshua F, Schmidt, Heather K, Yellapantula, Venkata, Miller, Christopher A, Ozenberger, Bradley A, Welch, John S, Link, Daniel C, Walter, Matthew J, Mardis, Elaine R, Dipersio, John F, Chen, Feng, Wilson, Richard K, Ley, Timothy J, Ding, Li

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Protein-structure-guided discovery of functional mutations across 19 cancer types von Niu, Beifang, Scott, Adam D, Sengupta, Sohini, Bailey, Matthew H, Batra, Prag, Ning, Jie, Wyczalkowski, Matthew A, Liang, Wen-Wei, Zhang, Qunyuan, McLellan, Michael D, Sun, Sam Q, Tripathi, Piyush, Lou, Carolyn, Ye, Kai, Mashl, R Jay, Wallis, John, Wendl, Michael C, Chen, Feng, Ding, Li

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BreakDancer: an algorithm for high-resolution mapping of genomic structural variation von Chen, Ken, Wallis, John W, McLellan, Michael D, Larson, David E, Kalicki, Joelle M, Pohl, Craig S, McGrath, Sean D, Wendl, Michael C, Zhang, Qunyuan, Locke, Devin P, Shi, Xiaoqi, Fulton, Robert S, Ley, Timothy J, Wilson, Richard K, Ding, Li, Mardis, Elaine R

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Background Mutations in Parental Cells Account for Most of the Genetic Heterogeneity of Induced Pluripotent Stem Cells von Young, Margaret A., Larson, David E., Sun, Chiao-Wang, George, Daniel R., Ding, Li, Miller, Christopher A., Lin, Ling, Pawlik, Kevin M., Chen, Ken, Fan, Xian, Schmidt, Heather, Kalicki-Veizer, Joelle, Cook, Lisa L., Swift, Gary W., Demeter, Ryan T., Wendl, Michael C., Sands, Mark S., Mardis, Elaine R., Wilson, Richard K., Townes, Tim M., Ley, Timothy J.

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Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting von Matsushita, Hirokazu, Vesely, Matthew D., Koboldt, Daniel C., Rickert, Charles G., Uppaluri, Ravindra, Magrini, Vincent J., Arthur, Cora D., White, J. Michael, Chen, Yee-Shiuan, Shea, Lauren K., Hundal, Jasreet, Wendl, Michael C., Demeter, Ryan, Wylie, Todd, Allison, James P., Smyth, Mark J., Old, Lloyd J., Mardis, Elaine R., Schreiber, Robert D.

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Systematic discovery of complex insertions and deletions in human cancers von Ye, Kai, Wang, Jiayin, Jayasinghe, Reyka, Lameijer, Eric-Wubbo, McMichael, Joshua F, Ning, Jie, McLellan, Michael D, Xie, Mingchao, Cao, Song, Yellapantula, Venkata, Huang, Kuan-lin, Scott, Adam, Foltz, Steven, Niu, Beifang, Johnson, Kimberly J, Moed, Matthijs, Slagboom, P Eline, Chen, Feng, Wendl, Michael C, Ding, Li

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H-index: however ranked, citations need context von Wendl, Michael C

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Advances for studying clonal evolution in cancer von Ding, Li, Raphael, Benjamin J, Chen, Feng, Wendl, Michael C

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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing von Ding, Li, Ley, Timothy J., Larson, David E., Miller, Christopher A., Koboldt, Daniel C., Welch, John S., Ritchey, Julie K., Young, Margaret A., Lamprecht, Tamara, McLellan, Michael D., McMichael, Joshua F., Wallis, John W., Lu, Charles, Shen, Dong, Harris, Christopher C., Dooling, David J., Fulton, Robert S., Fulton, Lucinda L., Chen, Ken, Schmidt, Heather, Kalicki-Veizer, Joelle, Magrini, Vincent J., Cook, Lisa, McGrath, Sean D., Vickery, Tammi L., Wendl, Michael C., Heath, Sharon, Watson, Mark A., Link, Daniel C., Tomasson, Michael H., Shannon, William D., Payton, Jacqueline E., Kulkarni, Shashikant, Westervelt, Peter, Walter, Matthew J., Graubert, Timothy A., Mardis, Elaine R., Wilson, Richard K., DiPersio, John F.

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Pseudonymous fame von Wendl, Michael C.

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Discovery of driver non-coding splice-site-creating mutations in cancer von Cao, Song, Zhou, Daniel Cui, Oh, Clara, Jayasinghe, Reyka G., Zhao, Yanyan, Yoon, Christopher J., Wyczalkowski, Matthew A., Bailey, Matthew H., Tsou, Terrence, Gao, Qingsong, Malone, Andrew, Reynolds, Sheila, Shmulevich, Ilya, Wendl, Michael C., Chen, Feng, Ding, Li

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Moving pan-cancer studies from basic research toward the clinic von Chen, Feng, Wendl, Michael C, Wyczalkowski, Matthew A, Bailey, Matthew H, Li, Yize, Ding, Li

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Epigenetic regulation during cancer transitions across 11 tumour types von Terekhanova, Nadezhda V., Karpova, Alla, Liang, Wen-Wei, Strzalkowski, Alexander, Chen, Siqi, Li, Yize, Southard-Smith, Austin N., Iglesia, Michael D., Wendl, Michael C., Jayasinghe, Reyka G., Liu, Jingxian, Song, Yizhe, Cao, Song, Houston, Andrew, Liu, Xiuting, Wyczalkowski, Matthew A., Lu, Rita Jui-Hsien, Caravan, Wagma, Shinkle, Andrew, Naser Al Deen, Nataly, Herndon, John M., Mudd, Jacqueline, Ma, Cong, Sarkar, Hirak, Sato, Kazuhito, Ibrahim, Omar M., Mo, Chia-Kuei, Chasnoff, Sara E., Porta-Pardo, Eduard, Held, Jason M., Pachynski, Russell, Schwarz, Julie K., Gillanders, William E., Kim, Albert H., Vij, Ravi, DiPersio, John F., Puram, Sidharth V., Chheda, Milan G., Fuh, Katherine C., DeNardo, David G., Fields, Ryan C., Chen, Feng, Raphael, Benjamin J., Ding, Li

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MSIsensor-ct: microsatellite instability detection using cfDNA sequencing data von Han, Xinyin, Zhang, Shuying, Zhou, Daniel Cui, Wang, Dongliang, He, Xiaoyu, Yuan, Danyang, Li, Ruilin, He, Jiayin, Duan, Xiaohong, Wendl, Michael C, Ding, Li, Niu, Beifang

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Analysis of next-generation genomic data in cancer: accomplishments and challenges von Ding, Li, Wendl, Michael C., Koboldt, Daniel C., Mardis, Elaine R.

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