Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning von Alipanahi, Babak, Delong, Andrew, Weirauch, Matthew T, Frey, Brendan J

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Determination and inference of eukaryotic transcription factor sequence specificity von Weirauch, Matthew T, Yang, Ally, Albu, Mihai, Cote, Atina G, Montenegro-Montero, Alejandro, Drewe, Philipp, Najafabadi, Hamed S, Lambert, Samuel A, Mann, Ishminder, Cook, Kate, Zheng, Hong, Goity, Alejandra, van Bakel, Harm, Lozano, Jean-Claude, Galli, Mary, Lewsey, Mathew G, Huang, Eryong, Mukherjee, Tuhin, Chen, Xiaoting, Reece-Hoyes, John S, Govindarajan, Sridhar, Shaulsky, Gad, Walhout, Albertha J M, Bouget, François-Yves, Ratsch, Gunnar, Larrondo, Luis F, Ecker, Joseph R, Hughes, Timothy R

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The Human Transcription Factors von Lambert, Samuel A., Jolma, Arttu, Campitelli, Laura F., Das, Pratyush K., Yin, Yimeng, Albu, Mihai, Chen, Xiaoting, Taipale, Jussi, Hughes, Timothy R., Weirauch, Matthew T.

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Quantifying inter-laboratory variability in stable isotope analysis of ancient skeletal remains von Pestle, William J, Crowley, Brooke E, Weirauch, Matthew T

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Single-nucleus RNA-seq identifies transcriptional heterogeneity in multinucleated skeletal myofibers von Petrany, Michael J., Swoboda, Casey O., Sun, Chengyi, Chetal, Kashish, Chen, Xiaoting, Weirauch, Matthew T., Salomonis, Nathan, Millay, Douglas P.

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PKM2-dependent metabolic skewing of hepatic Th17 cells regulates pathogenesis of non-alcoholic fatty liver disease von Moreno-Fernandez, Maria E., Giles, Daniel A., Oates, Jarren R., Chan, Calvin C., Damen, Michelle S.M.A., Doll, Jessica R., Stankiewicz, Traci E., Chen, Xiaoting, Chetal, Kashish, Karns, Rebekah, Weirauch, Matthew T., Romick-Rosendale, Lindsey, Xanthakos, Stavra A., Sheridan, Rachel, Szabo, Sara, Shah, Amy S., Helmrath, Michael A., Inge, Thomas H., Deshmukh, Hitesh, Salomonis, Nathan, Divanovic, Senad

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Evolutionary history of assassin bugs (insecta: hemiptera: Reduviidae): insights from divergence dating and ancestral state reconstruction von Hwang, Wei Song, Weirauch, Christiane

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Cladistic analysis of Reduviidae (Heteroptera: Cimicomorpha) based on morphological characters von WEIRAUCH, CHRISTIANE

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The Human Transcription Factors von Lambert, Samuel A., Jolma, Arttu, Campitelli, Laura F., Das, Pratyush K., Yin, Yimeng, Albu, Mihai, Chen, Xiaoting, Taipale, Jussi, Hughes, Timothy R., Weirauch, Matthew T.

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maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks von Cazares, Tareian A, Rizvi, Faiz W, Iyer, Balaji, Chen, Xiaoting, Kotliar, Michael, Bejjani, Anthony T, Wayman, Joseph A, Donmez, Omer, Wronowski, Benjamin, Parameswaran, Sreeja, Kottyan, Leah C, Barski, Artem, Weirauch, Matthew T, Prasath, V B Surya, Miraldi, Emily R

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Reconstructing host plant repertoire and timing of evolution of phyline plant bugs (Hemiptera, Miridae) von Bush, Tatiana, Weirauch, Christiane

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Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets von Hass, Matthew R, Brissette, Daniel, Parameswaran, Sreeja, Pujato, Mario, Donmez, Omer, Kottyan, Leah C, Weirauch, Matthew T, Kopan, Raphael

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NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule von Fu, Hailu, Zheng, Haizi, Chen, Xiaoting, Weirauch, Matthew T, Muglia, Louis J, Wang, Li, Liu, Yaping

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Mapping and Dynamics of Regulatory DNA and Transcription Factor Networks in A. thaliana von Sullivan, Alessandra M., Arsovski, Andrej A., Lempe, Janne, Bubb, Kerry L., Weirauch, Matthew T., Sabo, Peter J., Sandstrom, Richard, Thurman, Robert E., Neph, Shane, Reynolds, Alex P., Stergachis, Andrew B., Vernot, Benjamin, Johnson, Audra K., Haugen, Eric, Sullivan, Shawn T., Thompson, Agnieszka, Neri, Fidencio V., Weaver, Molly, Diegel, Morgan, Mnaimneh, Sanie, Yang, Ally, Hughes, Timothy R., Nemhauser, Jennifer L., Queitsch, Christine, Stamatoyannopoulos, John A.

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Genetic Associations with Gestational Duration and Spontaneous Preterm Birth von Zhang, Ge, Feenstra, Bjarke, Bacelis, Jonas, Liu, Xueping, Muglia, Lisa M, Juodakis, Julius, Miller, Daniel E, Litterman, Nadia, Jiang, Pan-Pan, Russell, Laura, Hinds, David A, Hu, Youna, Weirauch, Matthew T, Chen, Xiaoting, Chavan, Arun R, Wagner, Günter P, Pavličev, Mihaela, Nnamani, Mauris C, Maziarz, Jamie, Karjalainen, Minna K, Rämet, Mika, Sengpiel, Verena, Geller, Frank, Boyd, Heather A, Palotie, Aarno, Momany, Allison, Bedell, Bruce, Ryckman, Kelli K, Huusko, Johanna M, Forney, Carmy R, Kottyan, Leah C, Hallman, Mikko, Teramo, Kari, Nohr, Ellen A, Davey Smith, George, Melbye, Mads, Jacobsson, Bo, Muglia, Louis J

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C2H2 zinc finger proteins greatly expand the human regulatory lexicon von Najafabadi, Hamed S, Mnaimneh, Sanie, Schmitges, Frank W, Garton, Michael, Lam, Kathy N, Yang, Ally, Albu, Mihai, Weirauch, Matthew T, Radovani, Ernest, Kim, Philip M, Greenblatt, Jack, Frey, Brendan J, Hughes, Timothy R

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AP-1 activity induced by co-stimulation is required for chromatin opening during T cell activation von Yukawa, Masashi, Jagannathan, Sajjeev, Vallabh, Sushmitha, Kartashov, Andrey V, Chen, Xiaoting, Weirauch, Matthew T, Barski, Artem

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Runx Transcription Factors in T Cells-What Is Beyond Thymic Development? von Korinfskaya, Svetlana, Parameswaran, Sreeja, Weirauch, Matthew T, Barski, Artem

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Integrative species delimitation in Nearctic ambush bugs (Heteroptera: Reduviidae: Phymatinae): insights from molecules, geometric morphometrics and ecological associations von Masonick, Paul, Weirauch, Christiane

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Super-enhancer switching drives a burst in gene expression at the mitosis-to-meiosis transition von Maezawa, So, Sakashita, Akihiko, Yukawa, Masashi, Chen, Xiaoting, Takahashi, Kazuki, Alavattam, Kris G., Nakata, Ippo, Weirauch, Matthew T., Barski, Artem, Namekawa, Satoshi H.

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