Geometric deep learning of RNA structure von Townshend, Raphael J L, Eismann, Stephan, Watkins, Andrew M, Rangan, Ramya, Karelina, Masha, Das, Rhiju, Dror, Ron O

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OBSERVING AND PREDICTING THE 2015/16 EL NIÑO von L’Heureux, Michelle L., Takahashi, Ken, Watkins, Andrew B., Barnston, Anthony G., Becker, Emily J., Di Liberto, Tom E., Gamble, Felicity, Gottschalck, Jon, Halpert, Michael S., Huang, Boyin, Mosquera-Vásquez, Kobi, Wittenberg, Andrew T.

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Protein Domain Mimics as Modulators of Protein–Protein Interactions von Sawyer, Nicholas, Watkins, Andrew M, Arora, Paramjit S

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RNA 3D Modeling with FARFAR2, Online von Watkins, Andrew M., Das, Rhiju

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Macrocyclic β-Sheets Stabilized by Hydrogen Bond Surrogates von Nazzaro, Alex, Lu, Brandon, Sawyer, Nicholas, Watkins, Andrew M, Arora, Paramjit S

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De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures von Rangan, Ramya, Watkins, Andrew M, Chacon, Jose, Kretsch, Rachael, Kladwang, Wipapat, Zheludev, Ivan N, Townley, Jill, Rynge, Mats, Thain, Gregory, Das, Rhiju

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Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics von Leppek, Kathrin, Byeon, Gun Woo, Kladwang, Wipapat, Wayment-Steele, Hannah K., Kerr, Craig H., Xu, Adele F., Kim, Do Soon, Topkar, Ved V., Choe, Christian, Rothschild, Daphna, Tiu, Gerald C., Wellington-Oguri, Roger, Fujii, Kotaro, Sharma, Eesha, Watkins, Andrew M., Nicol, John J., Romano, Jonathan, Tunguz, Bojan, Diaz, Fernando, Cai, Hui, Guo, Pengbo, Wu, Jiewei, Meng, Fanyu, Shi, Shuai, Participants, Eterna, Dormitzer, Philip R., Solórzano, Alicia, Barna, Maria, Das, Rhiju

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Using Rosetta for RNA homology modeling von Watkins, Andrew M, Rangan, Ramya, Das, Rhiju

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Expanding the limits of the second genetic code with ribozymes von Lee, Joongoo, Schwieter, Kenneth E., Watkins, Andrew M., Kim, Do Soon, Yu, Hao, Schwarz, Kevin J., Lim, Jongdoo, Coronado, Jaime, Byrom, Michelle, Anslyn, Eric V., Ellington, Andrew D., Moore, Jeffrey S., Jewett, Michael C.

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Protein–Protein Interactions Mediated by Helical Tertiary Structure Motifs von Watkins, Andrew M, Wuo, Michael G, Arora, Paramjit S

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Accelerated cryo-EM-guided determination of three-dimensional RNA-only structures von Kappel, Kalli, Zhang, Kaiming, Su, Zhaoming, Watkins, Andrew M., Kladwang, Wipapat, Li, Shanshan, Pintilie, Grigore, Topkar, Ved V., Rangan, Ramya, Zheludev, Ivan N., Yesselman, Joseph D., Chiu, Wah, Das, Rhiju

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Community science designed ribosomes with beneficial phenotypes von Krüger, Antje, Watkins, Andrew M., Wellington-Oguri, Roger, Romano, Jonathan, Kofman, Camila, DeFoe, Alysse, Kim, Yejun, Anderson-Lee, Jeff, Fisker, Eli, Townley, Jill, d’Aquino, Anne E., Das, Rhiju, Jewett, Michael C.

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Hints for Icy Pebble Migration Feeding an Oxygen-rich Chemistry in the Inner Planet-forming Region of Disks von Banzatti, Andrea, Pascucci, Ilaria, Bosman, Arthur D., Pinilla, Paola, Salyk, Colette, Herczeg, Gregory J., Pontoppidan, Klaus M., Vazquez, Ivan, Watkins, Andrew, Krijt, Sebastiaan, Hendler, Nathan, Long, Feng

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Better together: Elements of successful scientific software development in a distributed collaborative community von Koehler Leman, Julia, Weitzner, Brian D, Renfrew, P Douglas, Lewis, Steven M, Moretti, Rocco, Watkins, Andrew M, Mulligan, Vikram Khipple, Lyskov, Sergey, Adolf-Bryfogle, Jared, Labonte, Jason W, Krys, Justyna, Bystroff, Christopher, Schief, William, Gront, Dominik, Schueler-Furman, Ora, Baker, David, Bradley, Philip, Dunbrack, Roland, Kortemme, Tanja, Leaver-Fay, Andrew, Strauss, Charlie E M, Meiler, Jens, Kuhlman, Brian, Gray, Jeffrey J, Bonneau, Richard

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Theoretical basis for stabilizing messenger RNA through secondary structure design von Wayment-Steele, Hannah K, Kim, Do Soon, Choe, Christian A, Nicol, John J, Wellington-Oguri, Roger, Watkins, Andrew M, Parra Sperberg, R Andres, Huang, Po-Ssu, Participants, Eterna, Das, Rhiju

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OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization von Ahdritz, Gustaf, Bouatta, Nazim, Floristean, Christina, Kadyan, Sachin, Xia, Qinghui, Gerecke, William, O’Donnell, Timothy J., Berenberg, Daniel, Fisk, Ian, Zanichelli, Niccolò, Zhang, Bo, Nowaczynski, Arkadiusz, Wang, Bei, Stepniewska-Dziubinska, Marta M., Zhang, Shang, Ojewole, Adegoke, Guney, Murat Efe, Biderman, Stella, Watkins, Andrew M., Ra, Stephen, Lorenzo, Pablo Ribalta, Nivon, Lucas, Weitzner, Brian, Ban, Yih-En Andrew, Chen, Shiyang, Zhang, Minjia, Li, Conglong, Song, Shuaiwen Leon, He, Yuxiong, Sorger, Peter K., Mostaque, Emad, Zhang, Zhao, Bonneau, Richard, AlQuraishi, Mohammed

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Anatomy of β‑Strands at Protein–Protein Interfaces von Watkins, Andrew M, Arora, Paramjit S

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Evaluation of Satellite Precipitation Estimates over Australia von Chua, Zhi-Weng, Kuleshov, Yuriy, Watkins, Andrew

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Side-Chain Conformational Preferences Govern Protein–Protein Interactions von Watkins, Andrew M, Bonneau, Richard, Arora, Paramjit S

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Assessing agricultural drought management strategies in the Northern Murray–Darling Basin von Aitkenhead, Isabella, Kuleshov, Yuriy, Watkins, Andrew B., Bhardwaj, Jessica, Asghari, Atifa

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