A new domestic cat genome assembly based on long sequence reads empowers feline genomic medicine and identifies a novel gene for dwarfism von Buckley, Reuben M, Davis, Brian W, Brashear, Wesley A, Farias, Fabiana H G, Kuroki, Kei, Graves, Tina, Hillier, LaDeana W, Kremitzki, Milinn, Li, Gang, Middleton, Rondo P, Minx, Patrick, Tomlinson, Chad, Lyons, Leslie A, Murphy, William J, Warren, Wesley C

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Extensive error in the number of genes inferred from draft genome assemblies von Denton, James F, Lugo-Martinez, Jose, Tucker, Abraham E, Schrider, Daniel R, Warren, Wesley C, Hahn, Matthew W

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Divergence and Functional Degradation of a Sex Chromosome-like Supergene von Tuttle, Elaina M., Bergland, Alan O., Korody, Marisa L., Brewer, Michael S., Newhouse, Daniel J., Minx, Patrick, Stager, Maria, Betuel, Adam, Cheviron, Zachary A., Warren, Wesley C., Gonser, Rusty A., Balakrishnan, Christopher N.

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Characterizing the Major Structural Variant Alleles of the Human Genome von Audano, Peter A., Sulovari, Arvis, Graves-Lindsay, Tina A., Cantsilieris, Stuart, Sorensen, Melanie, Welch, AnneMarie E., Dougherty, Max L., Nelson, Bradley J., Shah, Ankeeta, Dutcher, Susan K., Warren, Wesley C., Magrini, Vincent, McGrath, Sean D., Li, Yang I., Wilson, Richard K., Eichler, Evan E.

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Sequencing the mouse Y chromosome reveals convergent gene acquisition and amplification on both sex chromosomes von Soh, Y Q Shirleen, Alföldi, Jessica, Pyntikova, Tatyana, Brown, Laura G, Graves, Tina, Minx, Patrick J, Fulton, Robert S, Kremitzki, Colin, Koutseva, Natalia, Mueller, Jacob L, Rozen, Steve, Hughes, Jennifer F, Owens, Elaine, Womack, James E, Murphy, William J, Cao, Qing, de Jong, Pieter, Warren, Wesley C, Wilson, Richard K, Skaletsky, Helen, Page, David C

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development and characterization of a 60K SNP chip for chicken von Groenen, Martien A.M, Megens, Hendrik-Jan, Zare, Yalda, Warren, Wesley C, Hillier, LaDeana W, Crooijmans, Richard P.M.A, Vereijken, Addie, Okimoto, Ron, Muir, William M, Cheng, Hans H

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Developing tools for the study of molluscan immunity: The sequencing of the genome of the eastern oyster, Crassostrea virginica von Gómez-Chiarri, Marta, Warren, Wesley C., Guo, Ximing, Proestou, Dina

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Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators von Bellott, Daniel W., Hughes, Jennifer F., Skaletsky, Helen, Brown, Laura G., Pyntikova, Tatyana, Cho, Ting-Jan, Koutseva, Natalia, Zaghlul, Sara, Graves, Tina, Rock, Susie, Kremitzki, Colin, Fulton, Robert S., Dugan, Shannon, Ding, Yan, Morton, Donna, Khan, Ziad, Lewis, Lora, Buhay, Christian, Wang, Qiaoyan, Watt, Jennifer, Holder, Michael, Lee, Sandy, Nazareth, Lynne, Alföldi, Jessica, Rozen, Steve, Muzny, Donna M., Warren, Wesley C., Gibbs, Richard A., Wilson, Richard K., Page, David C.

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Avian W and mammalian Y chromosomes convergently retained dosage-sensitive regulators von Bellott, Daniel W, Skaletsky, Helen, Cho, Ting-Jan, Brown, Laura, Locke, Devin, Chen, Nancy, Galkina, Svetlana, Pyntikova, Tatyana, Koutseva, Natalia, Graves, Tina, Kremitzki, Colin, Warren, Wesley C, Clark, Andrew G, Gaginskaya, Elena, Wilson, Richard K, Page, David C

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INTEGRATE: gene fusion discovery using whole genome and transcriptome data von Zhang, Jin, White, Nicole M, Schmidt, Heather K, Fulton, Robert S, Tomlinson, Chad, Warren, Wesley C, Wilson, Richard K, Maher, Christopher A

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The genomic landscape of rapid repeated evolutionary adaptation to toxic pollution in wild fish von Reid, Noah M., Proestou, Dina A., Clark, Bryan W., Warren, Wesley C., Colbourne, John K., Shaw, Joseph R., Karchner, Sibel I., Hahn, Mark E., Nacci, Diane, Oleksiak, Marjorie F., Crawford, Douglas L., Whitehead, Andrew

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Genome of the house fly, Musca domestica L., a global vector of diseases with adaptations to a septic environment von Scott, Jeffrey G, Warren, Wesley C, Beukeboom, Leo W, Bopp, Daniel, Clark, Andrew G, Giers, Sarah D, Hediger, Monika, Jones, Andrew K, Kasai, Shinji, Leichter, Cheryl A, Li, Ming, Meisel, Richard P, Minx, Patrick, Murphy, Terence D, Nelson, David R, Reid, William R, Rinkevich, Frank D, Robertson, Hugh M, Sackton, Timothy B, Sattelle, David B, Thibaud-Nissen, Francoise, Tomlinson, Chad, van de Zande, Louis, Walden, Kimberly K O, Wilson, Richard K, Liu, Nannan

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Independent specialization of the human and mouse X chromosomes for the male germ line von Mueller, Jacob L, Skaletsky, Helen, Brown, Laura G, Zaghlul, Sara, Rock, Susan, Graves, Tina, Auger, Katherine, Warren, Wesley C, Wilson, Richard K, Page, David C

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A chromosome-level genome of Astyanax mexicanus surface fish for comparing population-specific genetic differences contributing to trait evolution von Warren, Wesley C., Boggs, Tyler E., Borowsky, Richard, Carlson, Brian M., Ferrufino, Estephany, Gross, Joshua B., Hillier, LaDeana, Hu, Zhilian, Keene, Alex C., Kenzior, Alexander, Kowalko, Johanna E., Tomlinson, Chad, Kremitzki, Milinn, Lemieux, Madeleine E., Graves-Lindsay, Tina, McGaugh, Suzanne E., Miller, Jeffrey T., Mommersteeg, Mathilda T. M., Moran, Rachel L., Peuß, Robert, Rice, Edward S., Riddle, Misty R., Sifuentes-Romero, Itzel, Stanhope, Bethany A., Tabin, Clifford J., Thakur, Sunishka, Yamamoto, Yoshiyuki, Rohner, Nicolas

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Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication von Montague, Michael J., Li, Gang, Gandolfi, Barbara, Khan, Razib, Aken, Bronwen L., Searle, Steven M. J., Minx, Patrick, Hillier, LaDeana W., Koboldt, Daniel C., Davis, Brian W., Driscoll, Carlos A., Barr, Christina S., Blackistone, Kevin, Quilez, Javier, Lorente-Galdos, Belen, Marques-Bonet, Tomas, Alkan, Can, Thomas, Gregg W. C., Hahn, Matthew W., Menotti-Raymond, Marilyn, O'Brien, Stephen J., Wilson, Richard K., Lyons, Leslie A., Murphy, William J., Warren, Wesley C.

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Fixation of allelic gene expression landscapes and expression bias pattern shape the transcriptome of the clonal Amazon molly von Lu, Yuan, Bierbach, David, Ormanns, Jenny, Warren, Wesley C, Walter, Ronald B, Schartl, Manfred

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The sterlet sturgeon genome sequence and the mechanisms of segmental rediploidization von Du, Kang, Stöck, Matthias, Kneitz, Susanne, Klopp, Christophe, Woltering, Joost M., Adolfi, Mateus Contar, Feron, Romain, Prokopov, Dmitry, Makunin, Alexey, Kichigin, Ilya, Schmidt, Cornelia, Fischer, Petra, Kuhl, Heiner, Wuertz, Sven, Gessner, Jörn, Kloas, Werner, Cabau, Cédric, Iampietro, Carole, Parrinello, Hugues, Tomlinson, Chad, Journot, Laurent, Postlethwait, John H., Braasch, Ingo, Trifonov, Vladimir, Warren, Wesley C., Meyer, Axel, Guiguen, Yann, Schartl, Manfred

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Phylogenomic analyses of all species of swordtail fishes (genus Xiphophorus) show that hybridization preceded speciation von Du, Kang, Ricci, Juliana Morena Bonita, Lu, Yuan, Garcia-Olazabal, Mateo, Walter, Ronald B., Warren, Wesley C., Dodge, Tristram O., Schumer, Molly, Park, Hyun, Meyer, Axel, Schartl, Manfred

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Pangolin genomes and the evolution of mammalian scales and immunity von Choo, Siew Woh, Rayko, Mike, Tan, Tze King, Hari, Ranjeev, Komissarov, Aleksey, Wee, Wei Yee, Yurchenko, Andrey A, Kliver, Sergey, Tamazian, Gaik, Antunes, Agostinho, Wilson, Richard K, Warren, Wesley C, Koepfli, Klaus-Peter, Minx, Patrick, Krasheninnikova, Ksenia, Kotze, Antoinette, Dalton, Desire L, Vermaak, Elaine, Paterson, Ian C, Dobrynin, Pavel, Sitam, Frankie Thomas, Rovie-Ryan, Jeffrine J, Johnson, Warren E, Yusoff, Aini Mohamed, Luo, Shu-Jin, Karuppannan, Kayal Vizi, Fang, Gang, Zheng, Deyou, Gerstein, Mark B, Lipovich, Leonard, O'Brien, Stephen J, Wong, Guat Jah

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Ancient hybridization and strong adaptation to viruses across African vervet monkey populations von Svardal, Hannes, Jasinska, Anna J, Apetrei, Cristian, Coppola, Giovanni, Huang, Yu, Schmitt, Christopher A, Jacquelin, Beatrice, Ramensky, Vasily, Müller-Trutwin, Michaela, Antonio, Martin, Weinstock, George, Grobler, J Paul, Dewar, Ken, Wilson, Richard K, Turner, Trudy R, Warren, Wesley C, Freimer, Nelson B, Nordborg, Magnus

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