New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx von Mounir, Mohamed, Lucchetta, Marta, Silva, Tiago C, Olsen, Catharina, Bontempi, Gianluca, Chen, Xi, Noushmehr, Houtan, Colaprico, Antonio, Papaleo, Elena

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MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction von Chen, Xing, Yin, Jun, Qu, Jia, Huang, Li

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DVA: predicting the functional impact of single nucleotide missense variants von Wang, Dong, Li, Jie, Wang, Edwin, Wang, Yadong

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PBMDA: A novel and effective path-based computational model for miRNA-disease association prediction von You, Zhu-Hong, Huang, Zhi-An, Zhu, Zexuan, Yan, Gui-Ying, Li, Zheng-Wei, Wen, Zhenkun, Chen, Xing

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Ensemble of decision tree reveals potential miRNA-disease associations von Chen, Xing, Zhu, Chi-Chi, Yin, Jun

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LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction von Chen, Xing, Huang, Li

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GCNCDA: A new method for predicting circRNA-disease associations based on Graph Convolutional Network Algorithm von Wang, Lei, You, Zhu-Hong, Li, Yang-Ming, Zheng, Kai, Huang, Yu-An

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NLLSS: Predicting Synergistic Drug Combinations Based on Semi-supervised Learning von Chen, Xing, Ren, Biao, Chen, Ming, Wang, Quanxin, Zhang, Lixin, Yan, Guiying

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Multiscale Embedded Gene Co-expression Network Analysis von Song, Won-Min, Zhang, Bin

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Evaluation and comparison of multi-omics data integration methods for cancer subtyping von Duan, Ran, Gao, Lin, Gao, Yong, Hu, Yuxuan, Xu, Han, Huang, Mingfeng, Song, Kuo, Wang, Hongda, Dong, Yongqiang, Jiang, Chaoqun, Zhang, Chenxing, Jia, Songwei

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Inference of Gene Regulatory Network Based on Local Bayesian Networks von Liu, Fei, Zhang, Shao-Wu, Guo, Wei-Feng, Wei, Ze-Gang, Chen, Luonan

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Transcriptome sequencing reveals potential mechanism of cryptic 3' splice site selection in SF3B1-mutated cancers von DeBoever, Christopher, Ghia, Emanuela M, Shepard, Peter J, Rassenti, Laura, Barrett, Christian L, Jepsen, Kristen, Jamieson, Catriona H M, Carson, Dennis, Kipps, Thomas J, Frazer, Kelly A

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Predictive genomics: A cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data von Wang, Edwin, Zaman, Naif, Mcgee, Shauna, Milanese, Jean-Sébastien, Masoudi-Nejad, Ali, O’Connor-McCourt, Maureen

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Tumor-infiltrating immune cells in hepatocellular carcinoma: Tregs is correlated with poor overall survival von Yu, SiZhe, Wang, Yu, Hou, Jia, Li, WenYuan, Wang, Xiao, Xiang, LuoChengLing, Tan, DeLi, Wang, WenJuan, Jiang, LiLi, Claret, Francois X, Jiao, Min, Guo, Hui

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Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration von Cohen, David P A, Martignetti, Loredana, Robine, Sylvie, Barillot, Emmanuel, Zinovyev, Andrei, Calzone, Laurence

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DNA methylation biomarkers for nasopharyngeal carcinoma von Han, Baoai, Yang, Xiuping, Zhang, Po, Zhang, Ya, Tu, Yaqin, He, Zuhong, Li, Yongqin, Yuan, Jie, Dong, Yaodong, Hosseini, Davood K, Zhou, Tao, Sun, Haiying

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Target of Rapamycin Signaling Regulates Metabolism, Growth, and Life Span in Arabidopsis von Ren, Maozhi, Venglat, Prakash, Qiu, Shuqing, Feng, Li, Cao, Yongguo, Wang, Edwin, Xiang, Daoquan, Wang, Jinghe, Alexander, Danny, Chalivendra, Subbaiah, Logan, David, Mattoo, Autar, Selvaraj, Gopalan, Datla, Raju

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Quantifying Clonal and Subclonal Passenger Mutations in Cancer Evolution von Bozic, Ivana, Gerold, Jeffrey M, Nowak, Martin A

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Overlap matrix completion for predicting drug-associated indications von Yang, Mengyun, Luo, Huimin, Li, Yaohang, Wu, Fang-Xiang, Wang, Jianxin

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Application of Single-Cell Assay for Transposase-Accessible Chromatin with High Throughput Sequencing in Plant Science: Advances, Technical Challenges, and Prospects von Lu, Chao, Wei, Yunxiao, Abbas, Mubashir, Agula, Hasi, Wang, Edwin, Meng, Zhigang, Zhang, Rui

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