Microbiome and metabolic disease: revisiting the bacterial phylum Bacteroidetes von Johnson, Elizabeth L., Heaver, Stacey L., Walters, William A., Ley, Ruth E.

Volltext

Large-scale replicated field study of maize rhizosphere identifies heritable microbes von Walters, William A., Jin, Zhao, Youngblut, Nicholas, Wallace, Jason G., Sutter, Jessica, Zhang, Wei, González-Peña, Antonio, Peiffer, Jason, Koren, Omry, Shi, Qiaojuan, Knight, Rob, del Rio, Tijana Glavina, Tringe, Susannah G., Buckler, Edward S., Dangl, Jeffery L., Ley, Ruth E.

Volltext

Conducting a Microbiome Study von Goodrich, Julia K., Di Rienzi, Sara C., Poole, Angela C., Koren, Omry, Walters, William A., Caporaso, J. Gregory, Knight, Rob, Ley, Ruth E.

Volltext

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample von Caporaso, J. Gregory, Lauber, Christian L, Walters, William A, Berg-Lyons, Donna, Lozupone, Catherine A, Turnbaugh, Peter J, Fierer, Noah, Knight, Rob

Volltext

Examining the global distribution of dominant archaeal populations in soil von Bates, Scott T, Berg-Lyons, Donna, Caporaso, J Gregory, Walters, William A, Knight, Rob, Fierer, Noah

Volltext

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms von Caporaso, J Gregory, Lauber, Christian L, Walters, William A, Berg-Lyons, Donna, Huntley, James, Fierer, Noah, Owens, Sarah M, Betley, Jason, Fraser, Louise, Bauer, Markus, Gormley, Niall, Gilbert, Jack A, Smith, Geoff, Knight, Rob

Volltext

Simultaneous amplicon sequencing to explore co-occurrence patterns of bacterial, archaeal and eukaryotic microorganisms in rumen microbial communities von Kittelmann, Sandra, Seedorf, Henning, Walters, William A, Clemente, Jose C, Knight, Rob, Gordon, Jeffrey I, Janssen, Peter H

Volltext

Transient Inability to Manage Proteobacteria Promotes Chronic Gut Inflammation in TLR5-Deficient Mice von Carvalho, Frederic A., Koren, Omry, Goodrich, Julia K., Johansson, Malin E.V., Nalbantoglu, Ilke, Aitken, Jesse D., Su, Yueju, Chassaing, Benoit, Walters, William A., González, Antonio, Clemente, Jose C., Cullender, Tyler C., Barnich, Nicolas, Darfeuille-Michaud, Arlette, Vijay-Kumar, Matam, Knight, Rob, Ley, Ruth E., Gewirtz, Andrew T.

Volltext

Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice von Ridaura, Vanessa K., Faith, Jeremiah J., Rey, Federico E., Cheng, Jiye, Duncan, Alexis E., Kau, Andrew L., Griffin, Nicholas W., Lombard, Vincent, Henrissat, Bernard, Bain, James R., Muehlbauer, Michael J., Ilkayeva, Olga, Semenkovich, Clay F., Funai, Katsuhiko, Hayashi, David K., Lyle, Barbara J., Martini, Margaret C., Ursell, Luke K., Clemente, Jose C., Van Treuren, William, Walters, William A., Knight, Rob, Newgard, Christopher B., Heath, Andrew C., Gordon, Jeffrey I.

Volltext

The under-recognized dominance of Verrucomicrobia in soil bacterial communities von Bergmann, Gaddy T., Bates, Scott T., Eilers, Kathryn G., Lauber, Christian L., Caporaso, J. Gregory, Walters, William A., Knight, Rob, Fierer, Noah

Volltext

Impact of training sets on classification of high-throughput bacterial 16s rRNA gene surveys von Werner, Jeffrey J, Koren, Omry, Hugenholtz, Philip, DeSantis, Todd Z, Walters, William A, Caporaso, J Gregory, Angenent, Largus T, Knight, Rob, Ley, Ruth E

Volltext

QIIME allows analysis of high-throughput community sequencing data von Caporaso, J Gregory, Kuczynski, Justin, Stombaugh, Jesse, Bittinger, Kyle, Bushman, Frederic D, Costello, Elizabeth K, Fierer, Noah, Peña, Antonio Gonzalez, Goodrich, Julia K, Gordon, Jeffrey I, Huttley, Gavin A, Kelley, Scott T, Knights, Dan, Koenig, Jeremy E, Ley, Ruth E, Lozupone, Catherine A, McDonald, Daniel, Muegge, Brian D, Pirrung, Meg, Reeder, Jens, Sevinsky, Joel R, Turnbaugh, Peter J, Walters, William A, Widmann, Jeremy, Yatsunenko, Tanya, Zaneveld, Jesse, Knight, Rob

Volltext

Dynamics of the human gut microbiome in inflammatory bowel disease von Halfvarson, Jonas, Brislawn, Colin J., Lamendella, Regina, Vázquez-Baeza, Yoshiki, Walters, William A., Bramer, Lisa M., D'Amato, Mauro, Bonfiglio, Ferdinando, McDonald, Daniel, Gonzalez, Antonio, McClure, Erin E., Dunklebarger, Mitchell F., Knight, Rob, Jansson, Janet K.

Volltext

Improved HF183 quantitative real-time PCR assay for characterization of human fecal pollution in ambient surface water samples von Green, Hyatt C, Haugland, Richard A, Varma, Manju, Millen, Hana T, Borchardt, Mark A, Field, Katharine G, Walters, William A, Knight, R, Sivaganesan, Mano, Kelty, Catherine A, Shanks, Orin C

Volltext

PrimerProspector: de novo design and taxonomic analysis of barcoded polymerase chain reaction primers von WALTERS, William A, CAPORASO, J. Gregory, LAUBER, Christian L, BERG-LYONS, Donna, FIERER, Noah, KNIGHT, Rob

Volltext

Nurture trumps nature in a longitudinal survey of salivary bacterial communities in twins from early adolescence to early adulthood von Stahringer, Simone S, Clemente, Jose C, Corley, Robin P, Hewitt, John, Knights, Dan, Walters, William A, Knight, Rob, Krauter, Kenneth S

Volltext

Meta-analyses of human gut microbes associated with obesity and IBD von Walters, William A., Xu, Zech, Knight, Rob

Volltext

A modified Michaelis-Menten equation estimates growth from birth to 3 years in healthy babies in the USA von Walters, William A, Ley, Catherine, Hastie, Trevor, Ley, Ruth E, Parsonnet, Julie

Volltext

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences von Rideout, Jai Ram, He, Yan, Navas-Molina, Jose A, Walters, William A, Ursell, Luke K, Gibbons, Sean M, Chase, John, McDonald, Daniel, Gonzalez, Antonio, Robbins-Pianka, Adam, Clemente, Jose C, Gilbert, Jack A, Huse, Susan M, Zhou, Hong-Wei, Knight, Rob, Caporaso, J Gregory

Volltext

Analysis of the gut microbiota in the old order Amish and its relation to the metabolic syndrome von Zupancic, Margaret L, Cantarel, Brandi L, Liu, Zhenqiu, Drabek, Elliott F, Ryan, Kathleen A, Cirimotich, Shana, Jones, Cheron, Knight, Rob, Walters, William A, Knights, Daniel, Mongodin, Emmanuel F, Horenstein, Richard B, Mitchell, Braxton D, Steinle, Nanette, Snitker, Soren, Shuldiner, Alan R, Fraser, Claire M

Volltext