Normal mode analysis as a method to derive protein dynamics information from the Protein Data Bank von Wako, Hiroshi, Endo, Shigeru

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New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj) von Kinjo, Akira R., Bekker, Gert‐Jan, Wako, Hiroshi, Endo, Shigeru, Tsuchiya, Yuko, Sato, Hiromu, Nishi, Hafumi, Kinoshita, Kengo, Suzuki, Hirofumi, Kawabata, Takeshi, Yokochi, Masashi, Iwata, Takeshi, Kobayashi, Naohiro, Fujiwara, Toshimichi, Kurisu, Genji, Nakamura, Haruki

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Normal mode analysis based on an elastic network model for biomolecules in the Protein Data Bank, which uses dihedral angles as independent variables von Wako, Hiroshi, Endo, Shigeru

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Ligand-induced conformational change of a protein reproduced by a linear combination of displacement vectors obtained from normal mode analysis von Wako, Hiroshi, Endo, Shigeru

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Dynamic properties of oligomers that characterize low-frequency normal modes von Wako, Hiroshi, Endo, Shigeru

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Normal mode analysis calculation for a full-atom model with a smaller number of degrees of freedom for huge protein molecules von Endo, Shigeru, Wako, Hiroshi

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Dynamic features of homodimer interfaces calculated by normal‐mode analysis von Tsuchiya, Yuko, Kinoshita, Kengo, Endo, Shigeru, Wako, Hiroshi

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Folding/unfolding kinetics of lattice proteins studied using a simple statistical mechanical model for protein folding, I: Dependence on native structures and amino acid sequences von Abe, Haruo, Wako, Hiroshi

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Characterization of protein folding by a Φ-value calculation with a statistical-mechanical model von Wako, Hiroshi, Abe, Haruo

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ProMode-Oligomer: Database of Normal Mode Analysis in Dihedral Angle Space for a Full-Atom System of Oligomeric Proteins von Wako, Hiroshi, Endo, Shigeru

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Prediction of protein motions from amino acid sequence and its application to protein-protein interaction von Hirose, Shuichi, Yokota, Kiyonobu, Kuroda, Yutaka, Wako, Hiroshi, Endo, Shigeru, Kanai, Satoru, Noguchi, Tamotsu

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A study of CDR3 loop dynamics reveals distinct mechanisms of peptide recognition by T‐cell receptors exhibiting different levels of cross‐reactivity von Tsuchiya, Yuko, Namiuchi, Yoshiki, Wako, Hiroshi, Tsurui, Hiromichi

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Memorial Issue for Professor Nobuhiko Saitô von Yura, Kei, Wako, Hiroshi

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A study of CDR 3 loop dynamics reveals distinct mechanisms of peptide recognition by T‐cell receptors exhibiting different levels of cross‐reactivity von Tsuchiya, Yuko, Namiuchi, Yoshiki, Wako, Hiroshi, Tsurui, Hiromichi

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Sampling efficiency of molecular dynamics and Monte Carlo method in protein simulation von Yamashita, Hiroshi, Endo, Shigeru, Wako, Hiroshi, Kidera, Akinori

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2P005 Anisotropic atomic fluctuations reproduced by normal modes based on an elastic-network model in the crystal environment(01A. Protein:Structure,Poster,The 52nd Annual Meeting... von Endo, Shigeru, Wako, Hiroshi

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2P005 結晶環境における弾性ネットワークモデルを用いた非等方性温度因子の再現(01A. 蛋白質:構造,ポスター,第52回日本生物物理学会年会(2014年度))...

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Use of Amino Acid Environment-dependent Substitution Tables and Conformational Propensities in Structure Prediction from Aligned Sequences of Homologous Proteins I. Solvent Accessi... von Wako, Hiroshi, Blundell, Tom L.

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3P023 Thermal fluctuation in high-resolution crystal structures reproduced by normal modes based on an elastic-network model in the crystal(01A. Protein: Structure,Poster) von Endo, Shigeru, Wako, Hiroshi

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3P023 結晶環境における弾性ネットワークモデルを用いた高分解能X線構造における温度因子の再現(01A.蛋白質:構造,ポスター,日本生物物理学会年会第51回(2013年度))...

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