Mechanism of environmentally driven conformational changes that modulate H-NS DNA-bridging activity von van der Valk, Ramon A, Vreede, Jocelyne, Qin, Liang, Moolenaar, Geri F, Hofmann, Andreas, Goosen, Nora, Dame, Remus T

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Sequence dependence of transient Hoogsteen base pairing in DNA von Pérez de Alba Ortíz, Alberto, Vreede, Jocelyne, Ensing, Bernd

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Predicting the mechanism and rate of H-NS binding to AT-rich DNA von Riccardi, Enrico, van Mastbergen, Eva C, Navarre, William Wiley, Vreede, Jocelyne

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Structural basis for osmotic regulation of the DNA binding properties of H-NS proteins von Qin, Liang, Bdira, Fredj Ben, Sterckx, Yann G J, Volkov, Alexander N, Vreede, Jocelyne, Giachin, Gabriele, van Schaik, Peter, Ubbink, Marcellus, Dame, Remus T

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Predicting the reaction coordinates of millisecond light-induced conformational changes in photoactive yellow protein von Vreede, Jocelyne, Juraszek, Jarek, Bolhuis, Peter G

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Elucidating the Locking Mechanism of Peptides onto Growing Amyloid Fibrils through Transition Path Sampling von Schor, Marieke, Vreede, Jocelyne, Bolhuis, Peter G.

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The Trigger Factor Chaperone Encapsulates and Stabilizes Partial Folds of Substrate Proteins von Singhal, Kushagra, Vreede, Jocelyne, Mashaghi, Alireza, Tans, Sander J, Bolhuis, Peter G

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Investigation of Surfactant Efficiency Using Dissipative Particle Dynamics von Rekvig, Live, Kranenburg, Marieke, Vreede, Jocelyne, Hafskjold, Bjørn, Smit, Berend

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The HAMP signal relay domain adopts multiple conformational states through collective piston and tilt motions von Zhu, Lizhe, Bolhuis, Peter G, Vreede, Jocelyne

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Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations von Voorspoels, Aderik, Vreede, Jocelyne, Carlon, Enrico

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Influence of Glu/Arg, Asp/Arg, and Glu/Lys Salt Bridges on α-Helical Stability and Folding Kinetics von Meuzelaar, Heleen, Vreede, Jocelyne, Woutersen, Sander

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Hydrophobic collapse of trigger factor monomer in solution von Singhal, Kushagra, Vreede, Jocelyne, Mashaghi, Alireza, Tans, Sander J, Bolhuis, Peter G

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Multiscale approach to the determination of the photoactive yellow protein signaling state ensemble von A Rohrdanz, Mary, Zheng, Wenwei, Lambeth, Bradley, Vreede, Jocelyne, Clementi, Cecilia

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A Model of H-NS Mediated Compaction of Bacterial DNA von Joyeux, Marc, Vreede, Jocelyne

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Rigid Base Biasing in Molecular Dynamics Enables Enhanced Sampling of DNA Conformations von Voorspoels, Aderik, Vreede, Jocelyne, Carlon, Enrico

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Proline 68 Enhances Photoisomerization Yield in Photoactive Yellow Protein von Rupenyan, Alisa B, Vreede, Jocelyne, van Stokkum, Ivo H. M, Hospes, Marijke, Kennis, John T. M, Hellingwerf, Klaas J, Groot, Marie Louise

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Common G102S polymorphism in chitotriosidase differentially affects activity towards 4-methylumbelliferyl substrates von Bussink, Anton P, Verhoek, Marri, Vreede, Jocelyne, Ghauharali-van der Vlugt, Karen, Donker-Koopman, Wilma E, Sprenger, Richard R, Hollak, Carla E, Aerts, Johannes M.F.G, Boot, Rolf G

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Decoding dissociation of sequence-specific protein–DNA complexes with non-equilibrium simulations von van Heesch, Thor, Bolhuis, Peter G, Vreede, Jocelyne

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Predicting the Structure and Dynamics of Membrane Protein GerAB from Bacillus subtilis von Blinker, Sophie, Vreede, Jocelyne, Setlow, Peter, Brul, Stanley

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A single histidine residue modulates enzymatic activity in acidic mammalian chitinase von Bussink, Anton P., Vreede, Jocelyne, Aerts, Johannes M.F.G., Boot, Rolf G.

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