Clustering gene expression time series data using an infinite Gaussian process mixture model von McDowell, Ian C, Manandhar, Dinesh, Vockley, Christopher M, Schmid, Amy K, Reddy, Timothy E, Engelhardt, Barbara E

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Regulation of chromatin accessibility and Zic binding at enhancers in the developing cerebellum von Frank, Christopher L, Liu, Fang, Wijayatunge, Ranjula, Song, Lingyun, Biegler, Matthew T, Yang, Marty G, Vockley, Christopher M, Safi, Alexias, Gersbach, Charles A, Crawford, Gregory E, West, Anne E

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RNA-guided gene activation by CRISPR-Cas9–based transcription factors von Perez-Pinera, Pablo, Kocak, D Dewran, Vockley, Christopher M, Adler, Andrew F, Kabadi, Ami M, Polstein, Lauren R, Thakore, Pratiksha I, Glass, Katherine A, Ousterout, David G, Leong, Kam W, Guilak, Farshid, Crawford, Gregory E, Reddy, Timothy E, Gersbach, Charles A

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Genome-wide quantification of the effects of DNA methylation on human gene regulation von Lea, Amanda J, Vockley, Christopher M, Johnston, Rachel A, Del Carpio, Christina A, Barreiro, Luis B, Reddy, Timothy E, Tung, Jenny

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Genome-wide specificity of DNA binding, gene regulation, and chromatin remodeling by TALE- and CRISPR/Cas9-based transcriptional activators von Polstein, Lauren R, Perez-Pinera, Pablo, Kocak, D Dewran, Vockley, Christopher M, Bledsoe, Peggy, Song, Lingyun, Safi, Alexias, Crawford, Gregory E, Reddy, Timothy E, Gersbach, Charles A

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Glucocorticoid receptor recruits to enhancers and drives activation by motif-directed binding von McDowell, Ian C, Barrera, Alejandro, D'Ippolito, Anthony M, Vockley, Christopher M, Hong, Linda K, Leichter, Sarah M, Bartelt, Luke C, Majoros, William H, Song, Lingyun, Safi, Alexias, Koçak, D Dewran, Gersbach, Charles A, Hartemink, Alexander J, Crawford, Gregory E, Engelhardt, Barbara E, Reddy, Timothy E

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Direct GR Binding Sites Potentiate Clusters of TF Binding across the Human Genome von Vockley, Christopher M., D’Ippolito, Anthony M., McDowell, Ian C., Majoros, William H., Safi, Alexias, Song, Lingyun, Crawford, Gregory E., Reddy, Timothy E.

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Decoding the role of regulatory element polymorphisms in complex disease von Vockley, Christopher M, Barrera, Alejandro, Reddy, Timothy E

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Human genome-wide measurement of drug-responsive regulatory activity von Johnson, Graham D., Barrera, Alejandro, McDowell, Ian C., D’Ippolito, Anthony M., Majoros, William H., Vockley, Christopher M., Wang, Xingyan, Allen, Andrew S., Reddy, Timothy E.

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Evidence for multiple roles for grainyheadlike 2 in the establishment and maintenance of human mucociliary airway epithelium von Gao, Xia, Vockley, Christopher M., Pauli, Florencia, Newberry, Kimberly M., Xue, Yan, Randell, Scott H., Reddy, Timothy E., Hogan, Brigid L. M.

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Massively parallel quantification of the regulatory effects of noncoding genetic variation in a human cohort von Vockley, Christopher M, Guo, Cong, Majoros, William H, Nodzenski, Michael, Scholtens, Denise M, Hayes, M Geoffrey, Lowe, Jr, William L, Reddy, Timothy E

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Pre-established Chromatin Interactions Mediate the Genomic Response to Glucocorticoids von D'Ippolito, Anthony M., McDowell, Ian C., Barrera, Alejandro, Hong, Linda K., Leichter, Sarah M., Bartelt, Luke C., Vockley, Christopher M., Majoros, William H., Safi, Alexias, Song, Lingyun, Gersbach, Charles A., Crawford, Gregory E., Reddy, Timothy E.

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Epigenome editing by a CRISPR-Cas9-based acetyltransferase activates genes from promoters and enhancers von Hilton, Isaac B, D'Ippolito, Anthony M, Vockley, Christopher M, Thakore, Pratiksha I, Crawford, Gregory E, Reddy, Timothy E, Gersbach, Charles A

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Congenital anemia reveals distinct targeting mechanisms for master transcription factor GATA1 von Ludwig, Leif S., Lareau, Caleb A., Bao, Erik L., Liu, Nan, Utsugisawa, Taiju, Tseng, Alex M., Myers, Samuel A., Verboon, Jeffrey M., Ulirsch, Jacob C., Luo, Wendy, Muus, Christoph, Fiorini, Claudia, Olive, Meagan E., Vockley, Christopher M., Munschauer, Mathias, Hunter, Abigail, Ogura, Hiromi, Yamamoto, Toshiyuki, Inada, Hiroko, Nakagawa, Shinichiro, Ohzono, Shuichi, Subramanian, Vidya, Chiarle, Roberto, Glader, Bertil, Carr, Steven A., Aryee, Martin J., Kundaje, Anshul, Orkin, Stuart H., Regev, Aviv, McCavit, Timothy L., Kanno, Hitoshi, Sankaran, Vijay G.

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Detection and characterization of silencers and enhancer-blockers in the greater CFTR locus von Petrykowska, Hanna M, Vockley, Christopher M, Elnitski, Laura

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A long-range flexible billboard model of gene activation von Vockley, Christopher M., McDowell, Ian C., D'Ippolito, Antony M., Reddy, Timothy E.

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Enhanced MyoD-Induced Transdifferentiation to a Myogenic Lineage by Fusion to a Potent Transactivation Domain von Kabadi, Ami M, Thakore, Pratiksha I, Vockley, Christopher M, Ousterout, David G, Gibson, Tyler M, Guilak, Farshid, Reddy, Timothy E, Gersbach, Charles A

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Evidence for multiple roles for grainyhead-like 2 in the establishment and maintenance of human mucociliary airway epithelium.[corrected] von Gao, Xia, Vockley, Christopher M, Pauli, Florencia, Newberry, Kimberly M, Xue, Yan, Randell, Scott H, Reddy, Timothy E, Hogan, Brigid L M

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Uncovering methylation-dependent genetic effects on regulatory element function in diverse genomes von Petersen, Rachel

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Increased Genetic Diversity and Intersubtype Recombinants of HIV-1 in Blood Donors From Urban Cameroon von Machuca, Ana, Tang, Shixing, Hu, Jinjie, Lee, Sherwin, Wood, Owen, Vockley, Christopher, Vutukuri, Suresh Gupta, Deshmukh, Ranjana, Awazi, Bih, Hewlett, Indira

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