Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes von Nielsen, H Bjørn, Almeida, Mathieu, Juncker, Agnieszka Sierakowska, Rasmussen, Simon, Li, Junhua, Sunagawa, Shinichi, Plichta, Damian R, Gautier, Laurent, Pedersen, Anders G, Le Chatelier, Emmanuelle, Pelletier, Eric, Bonde, Ida, Nielsen, Trine, Manichanh, Chaysavanh, Arumugam, Manimozhiyan, Batto, Jean-Michel, Quintanilha dos Santos, Marcelo B, Blom, Nikolaj, Borruel, Natalia, Burgdorf, Kristoffer S, Boumezbeur, Fouad, Casellas, Francesc, Doré, Joël, Dworzynski, Piotr, Guarner, Francisco, Hansen, Torben, Hildebrand, Falk, Kaas, Rolf S, Kennedy, Sean, Kristiansen, Karsten, Kultima, Jens Roat, Léonard, Pierre, Levenez, Florence, Lund, Ole, Moumen, Bouziane, Le Paslier, Denis, Pons, Nicolas, Pedersen, Oluf, Prifti, Edi, Qin, Junjie, Raes, Jeroen, Sørensen, Søren, Tap, Julien, Tims, Sebastian, Ussery, David W, Yamada, Takuji, Renault, Pierre, Sicheritz-Ponten, Thomas, Bork, Peer, Wang, Jun, Brunak, Søren, Ehrlich, S Dusko

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Human gut microbes impact host serum metabolome and insulin sensitivity von Pedersen, Helle Krogh, Gudmundsdottir, Valborg, Nielsen, Henrik Bjørn, Hyotylainen, Tuulia, Nielsen, Trine, Jensen, Benjamin A. H., Forslund, Kristoffer, Hildebrand, Falk, Prifti, Edi, Falony, Gwen, Le Chatelier, Emmanuelle, Levenez, Florence, Doré, Joel, Mattila, Ismo, Plichta, Damian R., Pöhö, Päivi, Hellgren, Lars I., Arumugam, Manimozhiyan, Sunagawa, Shinichi, Vieira-Silva, Sara, Jørgensen, Torben, Holm, Jacob Bak, Trošt, Kajetan, Consortium, MetaHIT, Kristiansen, Karsten, Brix, Susanne, Raes, Jeroen, Wang, Jun, Hansen, Torben, Bork, Peer, Brunak, Søren, Oresic, Matej, Ehrlich, S. Dusko, Pedersen, Oluf

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An integrated catalog of reference genes in the human gut microbiome von Li, Junhua, Jia, Huijue, Cai, Xianghang, Zhong, Huanzi, Feng, Qiang, Sunagawa, Shinichi, Arumugam, Manimozhiyan, Kultima, Jens Roat, Prifti, Edi, Nielsen, Trine, Juncker, Agnieszka Sierakowska, Manichanh, Chaysavanh, Chen, Bing, Zhang, Wenwei, Levenez, Florence, Wang, Juan, Xu, Xun, Xiao, Liang, Liang, Suisha, Zhang, Dongya, Zhang, Zhaoxi, Chen, Weineng, Zhao, Hailong, Al-Aama, Jumana Yousuf, Edris, Sherif, Yang, Huanming, Wang, Jian, Hansen, Torben, Nielsen, Henrik Bjørn, Brunak, Søren, Kristiansen, Karsten, Guarner, Francisco, Pedersen, Oluf, Doré, Joel, Ehrlich, S Dusko, Bork, Peer, Wang, Jun

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Richness of human gut microbiome correlates with metabolic markers von Le Chatelier, Emmanuelle, Nielsen, Trine, Qin, Junjie, Prifti, Edi, Hildebrand, Falk, Falony, Gwen, Almeida, Mathieu, Arumugam, Manimozhiyan, Batto, Jean-Michel, Kennedy, Sean, Leonard, Pierre, Li, Junhua, Burgdorf, Kristoffer, Grarup, Niels, Jørgensen, Torben, Brandslund, Ivan, Nielsen, Henrik Bjørn, Juncker, Agnieszka S., Bertalan, Marcelo, Levenez, Florence, Pons, Nicolas, Rasmussen, Simon, Sunagawa, Shinichi, Tap, Julien, Tims, Sebastian, Zoetendal, Erwin G., Brunak, Søren, Clément, Karine, Doré, Joël, Kleerebezem, Michiel, Kristiansen, Karsten, Renault, Pierre, Sicheritz-Ponten, Thomas, de Vos, Willem M., Zucker, Jean-Daniel, Raes, Jeroen, Hansen, Torben, Bork, Peer, Wang, Jun, Ehrlich, S. Dusko, Pedersen, Oluf

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Roadmap on Neuromorphic Photonics von Brunner, Daniel, Shastri, Bhavin J, Ballani, H, Barbay, Sylvain, Bienstman, Peter, Bilodeau, Simon, Bogaerts, Wim, Brennan, G, Buckley, Sonia, Cai, Xinlun, Cheung, Stanley, Choi, Suyeon, Christodoulides, Demetrios N, Chrostowski, Lukas, Clegg, J. H, Conti, Claudio, Dai, Qionghai, Di Lauro, Luigi, Diamantopoulos, Nikolaos Panteleimon, Dinc, Niyazi Ulas, Ewaniuk, Jacob, Fang, Lu, Freire, Pedro, Gentilini, Silvia, Gigan, Sylvain, Giorgi, Gian Luca, Gkantsidis, C, Gladrow, J, Goi, Elena, Goldmann, M, Grabulosa, A, Gu, Min, Guo, Xianxin, Hejda, Matěj, Horst, F, Hsieh, Jih Liang, Hu, Juejun, Hurtado, Antonio, Kalinin, K. P, Khajavikhan, Mercedeh, Lederman, Joshua C, Lee, Jongheon, Lenstra, Daan, Li, Yuhang, Lin, Xing, Lis, Mieszko, Lugnan, Alessio, Lvovsky, A. I, Manuylovich, Egor, Marandi, Alireza, Marchesin, Federico, Massar, Serge, Pegios, Miltiadis Moralis, Morandotti, Roberto, Moss, David J, Mukherjee, Avilash, Nikdast, Mahdi, Offrein, B. J, Oguz, Ilker, Oripov, Bakhrom, Ozcan, Aydogan, Parmigiani, F, Pasricha, Sudeep, Pavesi, Lorenzo, Pickup, L, Pierangeli, Davide, Pleros, Nikos, Porte, Xavier, Puts, Lukas, Qiao, Fei, Raineri, Fabrice, Romeira, Bruno, Schoenhardt, Steffen, Schwartz, Russell L . T, Shekhar, Sudip, Skalli, Anas, Sohoni, Mandar M, Soriano, Miguel C, Spall, James, Stabile, Ripalta, Stiller, Birgit, Sunada, Satoshi, Tefas, Anastasios, Tossoun, Bassem, Tsakyridis, Apostolos, Van Vaerenbergh, Thomas, Veraldi, Daniele, Verschaffelt, Guy, Vlieg, E. A, Wang, Tianyu, Wetzstein, Gordon, Wright, Logan G, Wu, Changming, Wu, Chu, Wu, Jiamin, Xia, Fei, Yang, Hangbo, Zambrini, Roberta, Zhang, Haiou, Zhang, Weipeng

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Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota von Forslund, Kristoffer, Hildebrand, Falk, Nielsen, Trine, Falony, Gwen, Le Chatelier, Emmanuelle, Sunagawa, Shinichi, Prifti, Edi, Vieira-Silva, Sara, Gudmundsdottir, Valborg, Krogh Pedersen, Helle, Arumugam, Manimozhiyan, Kristiansen, Karsten, Yvonne Voigt, Anita, Vestergaard, Henrik, Hercog, Rajna, Igor Costea, Paul, Roat Kultima, Jens, Li, Junhua, Jørgensen, Torben, Levenez, Florence, Dore, Joël, Bjørn Nielsen, H., Brunak, Søren, Raes, Jeroen, Hansen, Torben, Wang, Jun, Dusko Ehrlich, S., Bork, Peer, Pedersen, Oluf

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Mixed-Culture Transcriptome Analysis Reveals the Molecular Basis of Mixed-Culture Growth in Streptococcus thermophilus and Lactobacillus bulgaricus von Sieuwerts, Sander, Molenaar, Douwe, van Hijum, Sacha A.F.T, Beerthuyzen, Marke, Stevens, Marc J.A, Janssen, Patrick W.M, Ingham, Colin J, de Bok, Frank A.M, de Vos, Willem M, van Hylckama Vlieg, Johan E.T

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Fate, activity, and impact of ingested bacteria within the human gut microbiota von Derrien, Muriel, van Hylckama Vlieg, Johan E.T

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Unraveling Microbial Interactions in Food Fermentations: from Classical to Genomics Approaches von Sieuwerts, Sander, de Bok, Frank A.M, Hugenholtz, Jeroen, van Hylckama Vlieg, Johan E.T

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micro-Petri dish, a million-well growth chip for the culture and high-throughput screening of microorganisms von Ingham, Colin J, Sprenkels, Ad, Bomer, Johan, Molenaar, Douwe, van den Berg, Albert, van Hylckama Vlieg, Johan E.T, de Vos, Willem M

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Synthetic glycans control gut microbiome structure and mitigate colitis in mice von Tolonen, Andrew C., Beauchemin, Nicholas, Bayne, Charlie, Li, Lingyao, Tan, Jie, Lee, Jackson, Meehan, Brian M., Meisner, Jeffrey, Millet, Yves, LeBlanc, Gabrielle, Kottler, Robert, Rapp, Erdmann, Murphy, Chris, Turnbaugh, Peter J., von Maltzahn, Geoffrey, Liu, Christopher M., van Hylckama Vlieg, Johan E. T.

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Phenotypic and genomic diversity of Lactobacillus plantarum strains isolated from various environmental niches von Siezen, Roland J., Tzeneva, Vesela A., Castioni, Anna, Wels, Michiel, Phan, Hoa T. K., Rademaker, Jan L. W., Starrenburg, Marjo J. C., Kleerebezem, Michiel, Molenaar, Douwe, Van Hylckama Vlieg, Johan E. T.

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Modulation of gut microbiota during probiotic-mediated attenuation of metabolic syndrome in high fat diet-fed mice von Wang, Jingjing, Tang, Huang, Zhang, Chenhong, Zhao, Yufeng, Derrien, Muriel, Rocher, Emilie, van-Hylckama Vlieg, Johan ET, Strissel, Katherine, Zhao, Liping, Obin, Martin, Shen, Jian

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Genomic diversity and versatility of Lactobacillus plantarum, a natural metabolic engineer von Siezen, Roland J, van Hylckama Vlieg, Johan E T

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simple and fast method for determining colony forming units von Sieuwerts, S, de Bok, F.A.M, Mols, E, de Vos, W.M, van Hylckama Vlieg, J.E.T

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X-ray crystallography of solid–liquid interfaces von Vlieg, E.

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Gut microbiome composition and function in experimental colitis during active disease and treatment-induced remission von Rooks, Michelle G, Veiga, Patrick, Wardwell-Scott, Leslie H, Tickle, Timothy, Segata, Nicola, Michaud, Monia, Gallini, Carey Ann, Beal, Chloé, van Hylckama-Vlieg, Johan ET, Ballal, Sonia A, Morgan, Xochitl C, Glickman, Jonathan N, Gevers, Dirk, Huttenhower, Curtis, Garrett, Wendy S

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Genome-Scale Genotype-Phenotype Matching of Two Lactococcus lactis Isolates from Plants Identifies Mechanisms of Adaptation to the Plant Niche von Siezen, Roland J, Starrenburg, Marjo J.C, Boekhorst, Jos, Renckens, Bernadet, Molenaar, Douwe, van Hylckama Vlieg, Johan E.T

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Lactobacillus paracasei comparative genomics: towards species pan-genome definition and exploitation of diversity von Smokvina, Tamara, Wels, Michiel, Polka, Justyna, Chervaux, Christian, Brisse, Sylvain, Boekhorst, Jos, van Hylckama Vlieg, Johan E T, Siezen, Roland J

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Changes of the human gut microbiome induced by a fermented milk product von Veiga, Patrick, Pons, Nicolas, Agrawal, Anurag, Oozeer, Raish, Guyonnet, Denis, Brazeilles, Rémi, Faurie, Jean-Michel, van Hylckama Vlieg, Johan E. T., Houghton, Lesley A., Whorwell, Peter J., Ehrlich, S. Dusko, Kennedy, Sean P.

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