The Genetics of Transcription Factor DNA Binding Variation von Deplancke, Bart, Alpern, Daniel, Gardeux, Vincent

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Live-seq enables temporal transcriptomic recording of single cells von Chen, Wanze, Guillaume-Gentil, Orane, Rainer, Pernille Yde, Gäbelein, Christoph G., Saelens, Wouter, Gardeux, Vincent, Klaeger, Amanda, Dainese, Riccardo, Zachara, Magda, Zambelli, Tomaso, Vorholt, Julia A., Deplancke, Bart

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BRB-seq: ultra-affordable high-throughput transcriptomics enabled by bulk RNA barcoding and sequencing von Alpern, Daniel, Gardeux, Vincent, Russeil, Julie, Mangeat, Bastien, Meireles-Filho, Antonio C A, Breysse, Romane, Hacker, David, Deplancke, Bart

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Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle von Friman, Elias T, Deluz, Cédric, Meireles-Filho, Antonio Ca, Govindan, Subashika, Gardeux, Vincent, Deplancke, Bart, Suter, David M

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ASAP: a web-based platform for the analysis and interactive visualization of single-cell RNA-seq data von Gardeux, Vincent, David, Fabrice P A, Shajkofci, Adrian, Schwalie, Petra C, Deplancke, Bart

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Disparate temperature-dependent virus-host dynamics for SARS-CoV-2 and SARS-CoV in the human respiratory epithelium von V'kovski, Philip, Gultom, Mitra, Kelly, Jenna N, Steiner, Silvio, Russeil, Julie, Mangeat, Bastien, Cora, Elisa, Pezoldt, Joern, Holwerda, Melle, Kratzel, Annika, Laloli, Laura, Wider, Manon, Portmann, Jasmine, Tran, Thao, Ebert, Nadine, Stalder, Hanspeter, Hartmann, Rune, Gardeux, Vincent, Alpern, Daniel, Deplancke, Bart, Thiel, Volker, Dijkman, Ronald

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Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition von Bues, Johannes, Biočanin, Marjan, Pezoldt, Joern, Dainese, Riccardo, Chrisnandy, Antonius, Rezakhani, Saba, Saelens, Wouter, Gardeux, Vincent, Gupta, Revant, Sarkis, Rita, Russeil, Julie, Saeys, Yvan, Amstad, Esther, Claassen, Manfred, Lutolf, Matthias P., Deplancke, Bart

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DGRPool, a web tool leveraging harmonized Drosophila Genetic Reference Panel phenotyping data for the study of complex traits von Gardeux, Vincent, Bevers, Roel P J, David, Fabrice P A, Rosschaert, Emily, Rochepeau, Romain, Deplancke, Bart

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Non-coding variants impact cis-regulatory coordination in a cell type-specific manner von Pushkarev, Olga, van Mierlo, Guido, Kribelbauer, Judith Franziska, Saelens, Wouter, Gardeux, Vincent, Deplancke, Bart

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Inter-embryo gene expression variability recapitulates the hourglass pattern of evo-devo von Liu, Jialin, Frochaux, Michael, Gardeux, Vincent, Deplancke, Bart, Robinson-Rechavi, Marc

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A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation von Llimos, Gerard, Gardeux, Vincent, Koch, Ute, Kribelbauer, Judith F., Hafner, Antonina, Alpern, Daniel, Pezoldt, Joern, Litovchenko, Maria, Russeil, Julie, Dainese, Riccardo, Moia, Riccardo, Mahmoud, Abdurraouf Mokhtar, Rossi, Davide, Gaidano, Gianluca, Plass, Christoph, Lutsik, Pavlo, Gerhauser, Clarissa, Waszak, Sebastian M., Boettiger, Alistair, Radtke, Freddy, Deplancke, Bart

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Sex‐dependent and sex‐independent regulatory systems of size variation in natural populations von Okada, Hirokazu, Yagi, Ryohei, Gardeux, Vincent, Deplancke, Bart, Hafen, Ernst

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Author Correction: Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks von Erdil, Ertunc, Becker, Anton S., Schwyzer, Moritz, Martinez-Tellez, Borja, Ruiz, Jonatan R., Sartoretti, Thomas, Vargas, H. Alberto, Burger, A. Irene, Chirindel, Alin, Wild, Damian, Zamboni, Nicola, Deplancke, Bart, Gardeux, Vincent, Maushart, Claudia Irene, Betz, Matthias Johannes, Wolfrum, Christian, Konukoglu, Ender

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Predicting standardized uptake value of brown adipose tissue from CT scans using convolutional neural networks von Erdil, Ertunc, Becker, Anton S., Schwyzer, Moritz, Martinez-Tellez, Borja, Ruiz, Jonatan R., Sartoretti, Thomas, Vargas, H. Alberto, Burger, A. Irene, Chirindel, Alin, Wild, Damian, Zamboni, Nicola, Deplancke, Bart, Gardeux, Vincent, Maushart, Claudia Irene, Betz, Matthias Johannes, Wolfrum, Christian, Konukoglu, Ender

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Postnatal expansion of mesenteric lymph node stromal cells towards reticular and CD34+ stromal cell subsets von Pezoldt, Joern, Wiechers, Carolin, Zou, Mangge, Litovchenko, Maria, Biocanin, Marjan, Beckstette, Michael, Sitnik, Katarzyna, Palatella, Martina, van Mierlo, Guido, Chen, Wanze, Gardeux, Vincent, Floess, Stefan, Ebel, Maria, Russeil, Julie, Arampatzi, Panagiota, Vafardanejad, Ehsan, Saliba, Antoine-Emmanuel, Deplancke, Bart, Huehn, Jochen

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cis-regulatory variation modulates susceptibility to enteric infection in the Drosophila genetic reference panel von Frochaux, Michael V, Bou Sleiman, Maroun, Gardeux, Vincent, Dainese, Riccardo, Hollis, Brian, Litovchenko, Maria, Braman, Virginie S, Andreani, Tommaso, Osman, Dani, Deplancke, Bart

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Dissecting the brown adipogenic regulatory network using integrative genomics von Pradhan, Rachana N., Bues, Johannes J., Gardeux, Vincent, Schwalie, Petra C., Alpern, Daniel, Chen, Wanze, Russeil, Julie, Raghav, Sunil K., Deplancke, Bart

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Deterministic scRNA-seq captures variation in intestinal crypt and organoid composition von Bues, Johannes, Biočanin, Marjan, Pezoldt, Joern, Dainese, Riccardo, Chrisnandy, Antonius, Rezakhani, Saba, Saelens, Wouter, Gardeux, Vincent, Gupta, Revant, Sarkis, Rita, Russeil, Julie, Saeys, Yvan, Amstad, Esther, Claassen, Manfred, Lutolf, Matthias P., Deplancke, Bart

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N-of-1-pathways MixEnrich: advancing precision medicine via single-subject analysis in discovering dynamic changes of transcriptomes von Li, Qike, Schissler, A Grant, Gardeux, Vincent, Achour, Ikbel, Kenost, Colleen, Berghout, Joanne, Li, Haiquan, Zhang, Hao Helen, Lussier, Yves A

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Fly Cell Atlas: A single-nucleus transcriptomic atlas of the adult fruit fly von Li, Hongjie, Janssens, Jasper, De Waegeneer, Maxime, Kolluru, Sai Saroja, Davie, Kristofer, Gardeux, Vincent, Saelens, Wouter, David, Fabrice P A, Brbić, Maria, Spanier, Katina, Leskovec, Jure, McLaughlin, Colleen N, Xie, Qijing, Jones, Robert C, Brueckner, Katja, Shim, Jiwon, Tattikota, Sudhir Gopal, Schnorrer, Frank, Rust, Katja, Nystul, Todd G, Carvalho-Santos, Zita, Ribeiro, Carlos, Pal, Soumitra, Mahadevaraju, Sharvani, Przytycka, Teresa M, Allen, Aaron M, Goodwin, Stephen F, Berry, Cameron W, Fuller, Margaret T, White-Cooper, Helen, Matunis, Erika L, DiNardo, Stephen, Galenza, Anthony, O'Brien, Lucy Erin, Dow, Julian A T, Jasper, Heinrich, Oliver, Brian, Perrimon, Norbert, Deplancke, Bart, Quake, Stephen R, Luo, Liqun, Aerts, Stein, Agarwal, Devika, Ahmed-Braimah, Yasir, Arbeitman, Michelle, Ariss, Majd M, Augsburger, Jordan, Ayush, Kumar, Baker, Catherine C, Banisch, Torsten, Birker, Katja, Bodmer, Rolf, Bolival, Benjamin, Brantley, Susanna E, Brill, Julie A, Brown, Nora C, Buehner, Norene A, Cai, Xiaoyu Tracy, Cardoso-Figueiredo, Rita, Casares, Fernando, Chang, Amy, Clandinin, Thomas R, Crasta, Sheela, Desplan, Claude, Detweiler, Angela M, Dhakan, Darshan B, Donà, Erika, Engert, Stefanie, Floc'hlay, Swann, George, Nancy, González-Segarra, Amanda J, Groves, Andrew K, Gumbin, Samantha, Guo, Yanmeng, Harris, Devon E, Heifetz, Yael, Holtz, Stephen L, Horns, Felix, Hudry, Bruno, Hung, Ruei-Jiun, Jan, Yuh Nung, Jaszczak, Jacob S, Jefferis, Gregory S X E, Karkanias, Jim, Karr, Timothy L, Katheder, Nadja Sandra, Kezos, James, Kim, Anna A, Kim, Seung K, Kockel, Lutz, Konstantinides, Nikolaos, Kornberg, Thomas B, Krause, Henry M, Labott, Andrew Thomas, Laturney, Meghan, Lehmann, Ruth, Leinwand, Sarah, Li, Jiefu, Li, Joshua Shing Shun, Li, Kai

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