Accurate Binning of Metagenomic Contigs Using Composition, Coverage, and Assembly Graphs von Mallawaarachchi, Vijini, Lin, Yu

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Improving metagenomic binning results with overlapped bins using assembly graphs von Mallawaarachchi, Vijini G, Wickramarachchi, Anuradha S, Lin, Yu

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Ten simple rules and a template for creating workflows-as-applications von Roach, Michael J, Pierce-Ward, N Tessa, Suchecki, Radoslaw, Mallawaarachchi, Vijini, Papudeshi, Bhavya, Handley, Scott A, Brown, C Titus, Watson-Haigh, Nathan S, Edwards, Robert A

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The human gut virome: composition, colonization, interactions, and impacts on human health von Pargin, Evan, Roach, Michael J, Skye, Amber, Papudeshi, Bhavya, Inglis, Laura K, Mallawaarachchi, Vijini, Grigson, Susanna R, Harker, Clarice, Edwards, Robert A, Giles, Sarah K

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Quantitative metaproteomics reveals composition and metabolism characteristics of microbial communities in Chinese liquor fermentation starters von Zhao, Jinzhi, Yang, Yi, Chen, Liangqiang, Zheng, Jianxujie, Lv, Xibin, Li, Dandan, Fang, Ziyu, Shen, Chengpin, Mallawaarachchi, Vijini, Lin, Yu, Yu, Shaoning, Yang, Fan, Wang, Li, Qiao, Liang

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Contigs directed gene annotation (ConDiGA) for accurate protein sequence database construction in metaproteomics von Wu, Enhui, Mallawaarachchi, Vijini, Zhao, Jinzhi, Yang, Yi, Liu, Hebin, Wang, Xiaoqing, Shen, Chengpin, Lin, Yu, Qiao, Liang

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Stingray epidermal microbiomes are species-specific with local adaptations von Kerr, Emma N, Papudeshi, Bhavya, Haggerty, Miranda, Wild, Natasha, Goodman, Asha Z, Lima, Lais F O, Hesse, Ryan D, Skye, Amber, Mallawaarachchi, Vijini, Johri, Shaili, Parker, Sophia, Dinsdale, Elizabeth A

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Metaproteomics profiling of the microbial communities in fermentation starters ( Daqu ) during multi-round production of Chinese liquor von Zhao, Jinzhi, Yang, Yi, Teng, Mengjing, Zheng, Jianxujie, Wang, Bing, Mallawaarachchi, Vijini, Lin, Yu, Fang, Ziyu, Shen, Chengpin, Yu, Shaoning, Yang, Fan, Qiao, Liang, Wang, Li

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GraphBin: refined binning of metagenomic contigs using assembly graphs von Mallawaarachchi, Vijini, Wickramarachchi, Anuradha, Lin, Yu

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MetaBCC-LR: metagenomics binning by coverage and composition for long reads von Wickramarachchi, Anuradha, Mallawaarachchi, Vijini, Rajan, Vaibhav, Lin, Yu

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Plassembler: an automated bacterial plasmid assembly tool von Bouras, George, Sheppard, Anna E, Mallawaarachchi, Vijini, Vreugde, Sarah

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MetaBCC-LR: meta genomics b inning by c overage and c omposition for l ong r eads von Wickramarachchi, Anuradha, Mallawaarachchi, Vijini, Rajan, Vaibhav, Lin, Yu

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CH-Bin: A convex hull based approach for binning metagenomic contigs von Chandrasiri, Sunera, Perera, Thumula, Dilhara, Anjala, Perera, Indika, Mallawaarachchi, Vijini

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Change Detection and Notification of Web Pages: A Survey von Mallawaarachchi, Vijini, Meegahapola, Lakmal, Madhushanka, Roshan, Heshan, Eranga, Meedeniya, Dulani, Jayarathna, Sampath

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Phables: from fragmented assemblies to high-quality bacteriophage genomes von Mallawaarachchi, Vijini, Roach, Michael J, Decewicz, Przemyslaw, Papudeshi, Bhavya, Giles, Sarah K, Grigson, Susanna R, Bouras, George, Hesse, Ryan D, Inglis, Laura K, Hutton, Abbey L K, Dinsdale, Elizabeth A, Edwards, Robert A

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Ten simple rules and a template for creating workflows-as-applications von Michael J Roach, N Tessa Pierce-Ward, Radoslaw Suchecki, Vijini Mallawaarachchi, Bhavya Papudeshi, Scott A Handley, C Titus Brown, Nathan S Watson-Haigh, Robert A Edwards

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Solving genomic puzzles: computational methods for metagenomic binning von Mallawaarachchi, Vijini, Wickramarachchi, Anuradha, Xue, Hansheng, Papudeshi, Bhavya, Grigson, Susanna R, Bouras, George, Prahl, Rosa E, Kaphle, Anubhav, Verich, Andrey, Talamantes-Becerra, Berenice, Dinsdale, Elizabeth A, Edwards, Robert A

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Dnaapler: A tool to reorient circular microbial genomes von Bouras, George, Grigson, Susanna R., Papudeshi, Bhavya, Mallawaarachchi, Vijini, Roach, Michael J.

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Experiential Learning in Bioinformatics – Learner Support for Complex Workflow Modelling and Analysis von Mallawaarachchi, Vijini, Wickaramarachchi, Anuradha, Weliwita, Anuradha, Perera, Indika, Meedeniya, Dulani

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Koverage: Read-coverage analysis for massive (meta)genomics datasets von Roach, Michael J., Hart, Bradley J., Beecroft, Sarah J., Papudeshi, Bhavya, Inglis, Laura K., Grigson, Susanna R., Mallawaarachchi, Vijini, Bouras, George, Edwards, Robert A.

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