Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data von Koleti, Amar, Terryn, Raymond, Stathias, Vasileios, Chung, Caty, Cooper, Daniel J, Turner, John P, Vidović, Dušica, Forlin, Michele, Kelley, Tanya T, D'Urso, Alessandro, Allen, Bryce K, Torre, Denis, Jagodnik, Kathleen M, Wang, Lily, Jenkins, Sherry L, Mader, Christopher, Niu, Wen, Fazel, Mehdi, Mahi, Naim, Pilarczyk, Marcin, Clark, Nicholas, Shamsaei, Behrouz, Meller, Jarek, Vasiliauskas, Juozas, Reichard, John, Medvedovic, Mario, Ma'ayan, Avi, Pillai, Ajay, Schürer, Stephan C

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LINCS Data Portal 2.0: next generation access point for perturbation-response signatures von Stathias, Vasileios, Turner, John, Koleti, Amar, Vidovic, Dusica, Cooper, Daniel, Fazel-Najafabadi, Mehdi, Pilarczyk, Marcin, Terryn, Raymond, Chung, Caty, Umeano, Afoma, Clarke, Daniel J B, Lachmann, Alexander, Evangelista, John Erol, Ma’ayan, Avi, Medvedovic, Mario, Schürer, Stephan C

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Pharos: Collating protein information to shed light on the druggable genome von Nguyen, Dac-Trung, Mathias, Stephen, Bologa, Cristian, Brunak, Soren, Fernandez, Nicolas, Gaulton, Anna, Hersey, Anne, Holmes, Jayme, Jensen, Lars Juhl, Karlsson, Anneli, Liu, Guixia, Ma'ayan, Avi, Mandava, Geetha, Mani, Subramani, Mehta, Saurabh, Overington, John, Patel, Juhee, Rouillard, Andrew D, Schürer, Stephan, Sheils, Timothy, Simeonov, Anton, Sklar, Larry A, Southall, Noel, Ursu, Oleg, Vidovic, Dusica, Waller, Anna, Yang, Jeremy, Jadhav, Ajit, Oprea, Tudor I, Guha, Rajarshi

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TCRD and Pharos 2021: mining the human proteome for disease biology von Sheils, Timothy K, Mathias, Stephen L, Kelleher, Keith J, Siramshetty, Vishal B, Nguyen, Dac-Trung, Bologa, Cristian G, Jensen, Lars Juhl, Vidović, Dušica, Koleti, Amar, Schürer, Stephan C, Waller, Anna, Yang, Jeremy J, Holmes, Jayme, Bocci, Giovanni, Southall, Noel, Dharkar, Poorva, Mathé, Ewy, Simeonov, Anton, Oprea, Tudor I

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Connecting omics signatures and revealing biological mechanisms with iLINCS von Pilarczyk, Marcin, Fazel-Najafabadi, Mehdi, Kouril, Michal, Shamsaei, Behrouz, Vasiliauskas, Juozas, Niu, Wen, Mahi, Naim, Zhang, Lixia, Clark, Nicholas A., Ren, Yan, White, Shana, Karim, Rashid, Xu, Huan, Biesiada, Jacek, Bennett, Mark F., Davidson, Sarah E., Reichard, John F., Roberts, Kurt, Stathias, Vasileios, Koleti, Amar, Vidovic, Dusica, Clarke, Daniel J. B., Schürer, Stephan C., Ma’ayan, Avi, Meller, Jarek, Medvedovic, Mario

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Pharos 2023: an integrated resource for the understudied human proteome von Kelleher, Keith J, Sheils, Timothy K, Mathias, Stephen L, Yang, Jeremy J, Metzger, Vincent T, Siramshetty, Vishal B, Nguyen, Dac-Trung, Jensen, Lars Juhl, Vidović, Dušica, Schürer, Stephan C, Holmes, Jayme, Sharma, Karlie R, Pillai, Ajay, Bologa, Cristian G, Edwards, Jeremy S, Mathé, Ewy A, Oprea, Tudor I

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Detection of the clinically persistent, pathogenic yeast spp. Candida auris from hospital and municipal wastewater in Miami-Dade County, Florida von Babler, Kristina, Sharkey, Mark, Arenas, Sebastian, Amirali, Ayaaz, Beaver, Cynthia, Comerford, Samuel, Goodman, Kenneth, Grills, George, Holung, Michelle, Kobetz, Erin, Laine, Jennifer, Lamar, Walter, Mason, Christopher, Pronty, Darryl, Reding, Brian, Schürer, Stephan, Schaefer Solle, Natasha, Stevenson, Mario, Vidović, Dusica, Solo-Gabriele, Helena, Shukla, Bhavarth

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Degradation rates influence the ability of composite samples to represent 24-hourly means of SARS-CoV-2 and other microbiological target measures in wastewater von Babler, Kristina M., Sharkey, Mark E., Abelson, Samantha, Amirali, Ayaaz, Benitez, Aymara, Cosculluela, Gabriella A., Grills, George S., Kumar, Naresh, Laine, Jennifer, Lamar, Walter, Lamm, Erik D., Lyu, Jiangnan, Mason, Christopher E., McCabe, Philip M., Raghavender, Joshi, Reding, Brian D., Roca, Matthew A., Schürer, Stephan C., Stevenson, Mario, Szeto, Angela, Tallon, John J., Vidović, Dusica, Zarnegarnia, Yalda, Solo-Gabriele, Helena M.

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Unexplored therapeutic opportunities in the human genome von Oprea, Tudor I, Bologa, Cristian G, Brunak, Søren, Campbell, Allen, Gan, Gregory N, Gaulton, Anna, Gomez, Shawn M, Guha, Rajarshi, Hersey, Anne, Holmes, Jayme, Jadhav, Ajit, Jensen, Lars Juhl, Johnson, Gary L, Karlson, Anneli, Leach, Andrew R, Ma'ayan, Avi, Malovannaya, Anna, Mani, Subramani, Mathias, Steven L, McManus, Michael T, Meehan, Terrence F, von Mering, Christian, Muthas, Daniel, Nguyen, Dac-Trung, Overington, John P, Papadatos, George, Qin, Jun, Reich, Christian, Roth, Bryan L, Schürer, Stephan C, Simeonov, Anton, Sklar, Larry A, Southall, Noel, Tomita, Susumu, Tudose, Ilinca, Ursu, Oleg, Vidovic, Dušica, Waller, Anna, Westergaard, David, Yang, Jeremy J, Zahoránszky-Köhalmi, Gergely

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Antidiabetic actions of a non-agonist PPARγ ligand blocking Cdk5-mediated phosphorylation von Choi, Jang Hyun, Banks, Alexander S., Kamenecka, Theodore M., Busby, Scott A., Chalmers, Michael J., Kumar, Naresh, Kuruvilla, Dana S., Shin, Youseung, He, Yuanjun, Bruning, John B., Marciano, David P., Cameron, Michael D., Laznik, Dina, Jurczak, Michael J., Schürer, Stephan C., Vidović, Dušica, Shulman, Gerald I., Spiegelman, Bruce M., Griffin, Patrick R.

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Relationships between SARS-CoV‑2 in Wastewater and COVID-19 Clinical Cases and Hospitalizations, with and without Normalization against Indicators of Human Waste von Zhan, Qingyu, Babler, Kristina M., Sharkey, Mark E., Amirali, Ayaaz, Beaver, Cynthia C., Boone, Melinda M., Comerford, Samuel, Cooper, Daniel, Cortizas, Elena M., Currall, Benjamin B., Foox, Jonathan, Grills, George S., Kobetz, Erin, Kumar, Naresh, Laine, Jennifer, Lamar, Walter E., Mantero, Alejandro M.A., Mason, Christopher E., Reding, Brian D., Robertson, Maria, Roca, Matthew A., Ryon, Krista, Schürer, Stephan C., Shukla, Bhavarth S., Solle, Natasha Schaefer, Stevenson, Mario, Tallon Jr, John J., Thomas, Collette, Thomas, Tori, Vidović, Dušica, Williams, Sion L., Yin, Xue, Solo-Gabriele, Helena M.

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Multiscale mapping of transcriptomic signatures for cardiotoxic drugs von Hansen, Jens, Xiong, Yuguang, Siddiq, Mustafa M., Dhanan, Priyanka, Hu, Bin, Shewale, Bhavana, Yadaw, Arjun S., Jayaraman, Gomathi, Tolentino, Rosa E., Chen, Yibang, Martinez, Pedro, Beaumont, Kristin G., Sebra, Robert, Vidovic, Dusica, Schürer, Stephan C., Goldfarb, Joseph, Gallo, James M., Birtwistle, Marc R., Sobie, Eric A., Azeloglu, Evren U., Berger, Seth I., Chan, Angel, Schaniel, Christoph, Dubois, Nicole C., Iyengar, Ravi

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Monkeypox viral nucleic acids detected using both DNA and RNA extraction workflows von Sharkey, Mark E., Babler, Kristina M., Shukla, Bhavarth S., Abelson, Samantha M., Alsuliman, Bader, Amirali, Ayaaz, Comerford, Samuel, Grills, George S., Kumar, Naresh, Laine, Jennifer, Lee, Jisue, Lamar, Walter E., Mason, Christopher E., Penso, Johnathon, Reding, Brian D., Schürer, Stephan C., Stevenson, Mario, Vidović, Dušica, Solo-Gabriele, Helena M.

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Wastewater based surveillance can be used to reduce clinical testing intensity on a university campus von Amirali, Ayaaz, Babler, Kristina M., Sharkey, Mark E., Beaver, Cynthia C., Boone, Melinda M., Comerford, Samuel, Cooper, Daniel, Currall, Benjamin B., Goodman, Kenneth W., Grills, George S., Kobetz, Erin, Kumar, Naresh, Laine, Jennifer, Lamar, Walter E., Mason, Christopher E., Reding, Brian D., Roca, Matthew A., Ryon, Krista, Schürer, Stephan C., Shukla, Bhavarth S., Solle, Natasha Schaefer, Stevenson, Mario, Tallon, John J., Vidović, Dušica, Williams, Sion L., Yin, Xue, Solo-Gabriele, Helena M.

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Proteomic cellular signatures of kinase inhibitor-induced cardiotoxicity von Xiong, Yuguang, Liu, Tong, Chen, Tong, Hansen, Jens, Hu, Bin, Chen, Yibang, Jayaraman, Gomathi, Schürer, Stephan, Vidovic, Dusica, Goldfarb, Joseph, Sobie, Eric A., Birtwistle, Marc R., Iyengar, Ravi, Li, Hong, Azeloglu, Evren U.

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piNET: a versatile web platform for downstream analysis and visualization of proteomics data von Shamsaei, Behrouz, Chojnacki, Szymon, Pilarczyk, Marcin, Najafabadi, Mehdi, Niu, Wen, Chen, Chuming, Ross, Karen, Matlock, Andrea, Muhlich, Jeremy, Chutipongtanate, Somchai, Zheng, Jie, Turner, John, Vidović, Dušica, Jaffe, Jake, MacCoss, Michael, Wu, Cathy, Pillai, Ajay, Ma’ayan, Avi, Schürer, Stephan, Kouril, Michal, Medvedovic, Mario, Meller, Jarek

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Metadata Standard and Data Exchange Specifications to Describe, Model, and Integrate Complex and Diverse High-Throughput Screening Data from the Library of Integrated Network-based... von Vempati, Uma D., Chung, Caty, Mader, Chris, Koleti, Amar, Datar, Nakul, Vidović, Dušica, Wrobel, David, Erickson, Sean, Muhlich, Jeremy L., Berriz, Gabriel, Benes, Cyril H., Subramanian, Aravind, Pillai, Ajay, Shamu, Caroline E., Schürer, Stephan C.

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TIN-X version 3: update with expanded dataset and modernized architecture for enhanced illumination of understudied targets von Metzger, Vincent T, Cannon, Daniel C, Yang, Jeremy J, Mathias, Stephen L, Bologa, Cristian G, Waller, Anna, Schürer, Stephan C, Vidović, Dušica, Kelleher, Keith J, Sheils, Timothy K, Jensen, Lars Juhl, Lambert, Christophe G, Oprea, Tudor I, Edwards, Jeremy S

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Drug target ontology to classify and integrate drug discovery data von Lin, Yu, Mehta, Saurabh, Küçük-McGinty, Hande, Turner, John Paul, Vidovic, Dusica, Forlin, Michele, Koleti, Amar, Nguyen, Dac-Trung, Jensen, Lars Juhl, Guha, Rajarshi, Mathias, Stephen L, Ursu, Oleg, Stathias, Vasileios, Duan, Jianbin, Nabizadeh, Nooshin, Chung, Caty, Mader, Christopher, Visser, Ubbo, Yang, Jeremy J, Bologa, Cristian G, Oprea, Tudor I, Schürer, Stephan C

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Inhibition of Lymphoid Tyrosine Phosphatase by Benzofuran Salicylic Acids von Vang, Torkel, Xie, Yuli, Liu, Wallace H, Vidović, Dušica, Liu, Yidong, Wu, Shuangding, Smith, Deborah H, Rinderspacher, Alison, Chung, Caty, Gong, Gangli, Mustelin, Tomas, Landry, Donald W, Rickert, Robert C, Schürer, Stephan C, Deng, Shi-Xian, Tautz, Lutz

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