Research-based PAM50 signature and long-term breast cancer survival von Pu, Minya, Messer, Karen, Davies, Sherri R., Vickery, Tammi L., Pittman, Emily, Parker, Barbara A., Ellis, Matthew J., Flatt, Shirley W., Marinac, Catherine R., Nelson, Sandahl H., Mardis, Elaine R., Pierce, John P., Natarajan, Loki

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Development and verification of the PAM50-based Prosigna breast cancer gene signature assay von Wallden, Brett, Storhoff, James, Nielsen, Torsten, Dowidar, Naeem, Schaper, Carl, Ferree, Sean, Liu, Shuzhen, Leung, Samuel, Geiss, Gary, Snider, Jacqueline, Vickery, Tammi, Davies, Sherri R, Mardis, Elaine R, Gnant, Michael, Sestak, Ivana, Ellis, Matthew J, Perou, Charles M, Bernard, Philip S, Parker, Joel S

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Supervised Risk Predictor of Breast Cancer Based on Intrinsic Subtypes von PARKER, Joel S, MULLINS, Michael, QUACKENBUSH, John F, STIJLEMAN, Inge J, PALAZZO, Juan, MARRON, J. S, NOBEL, Andrew B, MARDIS, Elaine, NIELSEN, Torsten O, ELLIS, Matthew J, PEROU, Charles M, BERNARD, Philip S, CHEANG, Maggie C. U, LEUNG, Samuel, VODUC, David, VICKERY, Tammi, DAVIES, Sherri, FAURON, Christiane, XIAPING HE, ZHIYUAN HU

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Characterization of the Genomic and Immunologic Diversity of Malignant Brain Tumors through Multisector Analysis von Schaettler, Maximilian O, Richters, Megan M, Wang, Anthony Z, Skidmore, Zachary L, Fisk, Bryan, Miller, Katherine E, Vickery, Tammi L, Kim, Albert H, Chicoine, Michael R, Osbun, Joshua W, Leuthardt, Eric C, Dowling, Joshua L, Zipfel, Gregory J, Dacey, Ralph G, Lu, Hsiang-Chih, Johanns, Tanner M, Griffith, Obi L, Mardis, Elaine R, Griffith, Malachi, Dunn, Gavin P

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Use of Whole-Genome Sequencing to Diagnose a Cryptic Fusion Oncogene von Welch, John S, Westervelt, Peter, Ding, Li, Larson, David E, Klco, Jeffery M, Kulkarni, Shashikant, Wallis, John, Chen, Ken, Payton, Jacqueline E, Fulton, Robert S, Veizer, Joelle, Schmidt, Heather, Vickery, Tammi L, Heath, Sharon, Watson, Mark A, Tomasson, Michael H, Link, Daniel C, Graubert, Timothy A, DiPersio, John F, Mardis, Elaine R, Ley, Timothy J, Wilson, Richard K

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The Origin and Evolution of Mutations in Acute Myeloid Leukemia von Welch, John S., Ley, Timothy J., Link, Daniel C., Miller, Christopher A., Larson, David E., Koboldt, Daniel C., Wartman, Lukas D., Lamprecht, Tamara L., Liu, Fulu, Xia, Jun, Kandoth, Cyriac, Fulton, Robert S., McLellan, Michael D., Dooling, David J., Wallis, John W., Chen, Ken, Harris, Christopher C., Schmidt, Heather K., Kalicki-Veizer, Joelle M., Lu, Charles, Zhang, Qunyuan, Lin, Ling, O’Laughlin, Michelle D., McMichael, Joshua F., Delehaunty, Kim D., Fulton, Lucinda A., Magrini, Vincent J., McGrath, Sean D., Demeter, Ryan T., Vickery, Tammi L., Hundal, Jasreet, Cook, Lisa L., Swift, Gary W., Reed, Jerry P., Alldredge, Patricia A., Wylie, Todd N., Walker, Jason R., Watson, Mark A., Heath, Sharon E., Shannon, William D., Varghese, Nobish, Nagarajan, Rakesh, Payton, Jacqueline E., Baty, Jack D., Kulkarni, Shashikant, Klco, Jeffery M., Tomasson, Michael H., Westervelt, Peter, Walter, Matthew J., Graubert, Timothy A., DiPersio, John F., Ding, Li, Mardis, Elaine R., Wilson, Richard K.

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miRNAs and Long-term Breast Cancer Survival: Evidence from the WHEL Study von Natarajan, Loki, Pu, Minya, Davies, Sherri R, Vickery, Tammi L, Nelson, Sandahl H, Pittman, Emily, Parker, Barbara A, Ellis, Matthew J, Flatt, Shirley W, Mardis, Elaine R, Marinac, Catherine R, Pierce, John P, Messer, Karen

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Breast Cancer Neoantigens Can Induce CD8 + T-Cell Responses and Antitumor Immunity von Zhang, Xiuli, Kim, Samuel, Hundal, Jasreet, Herndon, John M, Li, Shunqiang, Petti, Allegra A, Soysal, Savas D, Li, Lijin, McLellan, Mike D, Hoog, Jeremy, Primeau, Tina, Myers, Nancy, Vickery, Tammi L, Sturmoski, Mark, Hagemann, Ian S, Miller, Chris A, Ellis, Matthew J, Mardis, Elaine R, Hansen, Ted, Fleming, Timothy P, Goedegebuure, S Peter, Gillanders, William E

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Neoantigen DNA vaccines are safe, feasible, and induce neoantigen-specific immune responses in triple-negative breast cancer patients von Zhang, Xiuli, Goedegebuure, S. Peter, Chen, Michael Y., Mishra, Rashmi, Zhang, Felicia, Yu, Yik Yeung, Singhal, Kartik, Li, Lijin, Gao, Feng, Myers, Nancy B., Vickery, Tammi, Hundal, Jasreet, McLellan, Michael D., Sturmoski, Mark A., Kim, Samuel W., Chen, Ina, Davidson, Jesse T., Sankpal, Narendra V., Myles, Stephanie, Suresh, Rama, Ma, Cynthia X., Foluso, Ademuyiwa, Wang-Gillam, Andrea, Davies, Sherri, Hagemann, Ian S., Mardis, Elaine R., Griffith, Obi, Griffith, Malachi, Miller, Christopher A., Hansen, Ted H., Fleming, Timothy P., Schreiber, Robert D., Gillanders, William E.

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PAM50 gene signatures and breast cancer prognosis with adjuvant anthracycline- and taxane-based chemotherapy: correlative analysis of C9741 (Alliance) von Liu, Minetta C, Pitcher, Brandelyn N, Mardis, Elaine R, Davies, Sherri R, Friedman, Paula N, Snider, Jacqueline E, Vickery, Tammi L, Reed, Jerry P, DeSchryver, Katherine, Singh, Baljit, Gradishar, William J, Perez, Edith A, Martino, Silvana, Citron, Marc L, Norton, Larry, Winer, Eric P, Hudis, Clifford A, Carey, Lisa A, Bernard, Philip S, Nielsen, Torsten O, Perou, Charles M, Ellis, Matthew J, Barry, William T

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Estrogen receptor expression is high but is of lower intensity in tubular carcinoma than in well-differentiated invasive ductal carcinoma von Jorns, Julie M, Thomas, Dafydd G, Healy, Patrick N, Daignault, Stephanie, Vickery, Tammi L, Snider, Jacqueline E, Mardis, Elaine R, Davies, Sherri R, Ellis, Matthew J, Visscher, Daniel W

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A Comparison of PAM50 Intrinsic Subtyping with Immunohistochemistry and Clinical Prognostic Factors in Tamoxifen-Treated Estrogen Receptor-Positive Breast Cancer von NIELSEN, Torsten O, PARKER, Joel S, CHEANG, Maggie C. U, MARDIS, Elaine R, PEROU, Charles M, BERNARD, Philip S, ELLIS, Matthew J, LEUNG, Samuel, VODUC, David, EBBERT, Mark, VICKERY, Tammi, DAVIES, Sherri R, SNIDER, Jacqueline, STIJLEMAN, Inge J, REED, Jerry

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Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing von Ding, Li, Ley, Timothy J., Larson, David E., Miller, Christopher A., Koboldt, Daniel C., Welch, John S., Ritchey, Julie K., Young, Margaret A., Lamprecht, Tamara, McLellan, Michael D., McMichael, Joshua F., Wallis, John W., Lu, Charles, Shen, Dong, Harris, Christopher C., Dooling, David J., Fulton, Robert S., Fulton, Lucinda L., Chen, Ken, Schmidt, Heather, Kalicki-Veizer, Joelle, Magrini, Vincent J., Cook, Lisa, McGrath, Sean D., Vickery, Tammi L., Wendl, Michael C., Heath, Sharon, Watson, Mark A., Link, Daniel C., Tomasson, Michael H., Shannon, William D., Payton, Jacqueline E., Kulkarni, Shashikant, Westervelt, Peter, Walter, Matthew J., Graubert, Timothy A., Mardis, Elaine R., Wilson, Richard K., DiPersio, John F.

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A 50-Gene Intrinsic Subtype Classifier for Prognosis and Prediction of Benefit from Adjuvant Tamoxifen von CHIA, Stephen K, BRAMWELL, Vivien H, PARKER, Joel S, BERNARD, Philip S, PEROU, Charles M, ELLIS, Matthew J, NIELSEN, Torsten O, DONGSHENG TU, SHEPHERD, Lois E, SHAN JIANG, VICKERY, Tammi, MARDIS, Elaine, LEUNG, Samuel, UNG, Karen, PRITCHARD, Kathleen I

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Whole-genome analysis informs breast cancer response to aromatase inhibition von Ellis, Matthew J., Ding, Li, Shen, Dong, Luo, Jingqin, Suman, Vera J., Wallis, John W., Van Tine, Brian A., Hoog, Jeremy, Goiffon, Reece J., Goldstein, Theodore C., Ng, Sam, Lin, Li, Crowder, Robert, Snider, Jacqueline, Ballman, Karla, Weber, Jason, Chen, Ken, Koboldt, Daniel C., Kandoth, Cyriac, Schierding, William S., McMichael, Joshua F., Miller, Christopher A., Lu, Charles, Harris, Christopher C., McLellan, Michael D., Wendl, Michael C., DeSchryver, Katherine, Allred, D. Craig, Esserman, Laura, Unzeitig, Gary, Margenthaler, Julie, Babiera, G. V., Marcom, P. Kelly, Guenther, J. M., Leitch, Marilyn, Hunt, Kelly, Olson, John, Tao, Yu, Maher, Christopher A., Fulton, Lucinda L., Fulton, Robert S., Harrison, Michelle, Oberkfell, Ben, Du, Feiyu, Demeter, Ryan, Vickery, Tammi L., Elhammali, Adnan, Piwnica-Worms, Helen, McDonald, Sandra, Watson, Mark, Dooling, David J., Ota, David, Chang, Li-Wei, Bose, Ron, Ley, Timothy J., Piwnica-Worms, David, Stuart, Joshua M., Wilson, Richard K., Mardis, Elaine R.

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DNMT3A Mutations in Acute Myeloid Leukemia von Ley, Timothy J, Ding, Li, Walter, Matthew J, McLellan, Michael D, Lamprecht, Tamara, Larson, David E, Kandoth, Cyriac, Payton, Jacqueline E, Baty, Jack, Welch, John, Harris, Christopher C, Lichti, Cheryl F, Townsend, R. Reid, Fulton, Lucinda A, Fulton, Robert S, Dooling, David J, Koboldt, Daniel C, Schmidt, Heather, Zhang, Qunyuan, Osborne, John R, Lin, Ling, O'Laughlin, Michelle, McMichael, Joshua F, Delehaunty, Kim D, McGrath, Sean D, Magrini, Vincent J, Vickery, Tammi L, Hundal, Jasreet, Cook, Lisa L, Conyers, Joshua J, Swift, Gary W, Reed, Jerry P, Alldredge, Patricia A, Wylie, Todd, Walker, Jason, Kalicki, Joelle, Watson, Mark A, Heath, Sharon, Shannon, William D, Varghese, Nobish, Nagarajan, Rakesh, Westervelt, Peter, Tomasson, Michael H, Link, Daniel C, Graubert, Timothy A, DiPersio, John F, Mardis, Elaine R, Wilson, Richard K

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Comprehensive genomic characterization defines human glioblastoma genes and core pathways von McLendon, Roger, Friedman, Allan, Bigner, Darrell, Brat, Daniel J, M Mastrogianakis, Gena, Lehman, Norman, Aldape, Ken, Bogler, Oliver, Nazareth, Lynn, Hall, Otis, Zhu, Yiming, Jhangiani, Shalini, San Lucas, Anthony, Kovar, Christie, Dinh, Huyen, Santibanez, Jireh, Joshi, Vandita, Wilkinson, Jane, Onofrio, Robert, Ardlie, Kristin, Gabriel, Stacey, Ding, Li, McLellan, Michael D, Shi, Xiaoqi, Abbott, Rachel, Fulton, Lucinda, Meyer, Rick, Osborne, John R, Dunford-Shore, Brian H, Delehaunty, Kim, Swift, Gary, Pohl, Craig, Leong, Shin, Haipek, Carrie, Schmidt, Heather, Vickery, Tammi, Chinwalla, Asif, Weinstock, George M, Mardis, Elaine R, Verhaak, Roel GW, O'Kelly, Michael, Beroukhim, Rameen, Carter, Scott, Chiang, Derek, Gould, Josh, Korn, Josh, Mermel, Craig, Monti, Stefano, Nguyen, Huy, Parkin, Melissa, Stransky, Nicolas, Meyerson, Matthew, Protopopov, Alexei, Zhang, Jianhua, Perna, Ilana, Yao, Jun, Kim, Hyunsoo, Kohane, Isaac S, Seidman, Jon, Kucherlapati, Raju, Laird, Peter W, Cope, Leslie, Herman, James G, Weisenberger, Daniel J, Mi Yi, Joo, Southwick, Audrey, Aggarwal, Amita, Brooks, James D, Spellman, Paul T, Marr, Henry, Gi Choi, Yoon, Wang, Victoria, Robinson, Mark, Peng, Vivian, Fontenay, Gerald V, Parvin, Bahram, Speed, Terence P, Gray, Joe W, Brennan, Cameron, Olshen, Adam, Schultz, Nikolaus, Stukalov, Alexey, Cerami, Ethan, Qin, Li-Xuan, Ladanyi, Marc, Neil Hayes, D, Topal, Michael D, Shi, Yan, Penny, Robert, Lenkiewicz, Elizabeth, Morris, Scott, Kahn, Ari, Chen, Jessica, Nassau, David, Hickey, Erin, Vockley, Joseph, Vaught, Jim, Madhavan, Subhashree, Guyer, Mark, Thomson, Elizabeth

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Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome von Mardis, Elaine R, Ding, Li, Dooling, David J, Larson, David E, McLellan, Michael D, Chen, Ken, Koboldt, Daniel C, Fulton, Robert S, Fulton, Lucinda A, Delehaunty, Kim D, McGrath, Sean D, Locke, Devin P, Magrini, Vincent J, Abbott, Rachel M, Vickery, Tammi L, Reed, Jerry S, Robinson, Jody S, Wylie, Todd, Smith, Scott M, Carmichael, Lynn, Eldred, James M, Harris, Christopher C, Walker, Jason, Peck, Joshua B, Du, Feiyu, Dukes, Adam F, Sanderson, Gabriel E, Brummett, Anthony M, Clark, Eric, McMichael, Joshua F, Meyer, Rick J, Schindler, Jonathan K, Pohl, Craig S, Wallis, John W, Shi, Xiaoqi, Lin, Ling, Schmidt, Heather, Tang, Yuzhu, Haipek, Carrie, Wiechert, Madeline E, Ivy, Jolynda V, Kalicki, Joelle, Elliott, Glendoria, Ries, Rhonda E, Payton, Jacqueline E, Westervelt, Peter, Tomasson, Michael H, Watson, Mark A, Baty, Jack, Heath, Sharon, Shannon, William D, Nagarajan, Rakesh, Link, Daniel C, Walter, Matthew J, Graubert, Timothy A, DiPersio, John F, Wilson, Richard K, Ley, Timothy J

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Genome remodelling in a basal-like breast cancer metastasis and xenograft von Wilson, Richard K, Ding, Li, Ellis, Matthew J, Li, Shunqiang, Larson, David E, Chen, Ken, Wallis, John W, Harris, Christopher C, McLellan, Michael D, Fulton, Robert S, Fulton, Lucinda L, Abbott, Rachel M, Hoog, Jeremy, Dooling, David J, Koboldt, Daniel C, Schmidt, Heather, Kalicki, Joelle, Zhang, Qunyuan, Chen, Lei, Lin, Ling, Wendl, Michael C, McMichael, Joshua F, Magrini, Vincent J, Cook, Lisa, McGrath, Sean D, Vickery, Tammi L, Appelbaum, Elizabeth, DeSchryver, Katherine, Davies, Sherri, Guintoli, Therese, Lin, Li, Crowder, Robert, Tao, Yu, Snider, Jacqueline E, Smith, Scott M, Dukes, Adam F, Sanderson, Gabriel E, Pohl, Craig S, Delehaunty, Kim D, Fronick, Catrina C, Pape, Kimberley A, Reed, Jerry S, Robinson, Jody S, Hodges, Jennifer S, Schierding, William, Dees, Nathan D, Shen, Dong, Locke, Devin P, Wiechert, Madeline E, Eldred, James M, Peck, Josh B, Oberkfell, Benjamin J, Lolofie, Justin T, Du, Feiyu, Hawkins, Amy E, O’Laughlin, Michelle D, Bernard, Kelly E, Cunningham, Mark, Elliott, Glendoria, Mason, Mark D, Thompson Jr, Dominic M, Ivanovich, Jennifer L, Goodfellow, Paul J, Perou, Charles M, Weinstock, George M, Aft, Rebecca, Watson, Mark, Ley, Timothy J, Mardis, Elaine R

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Somatic mutations affect key pathways in lung adenocarcinoma von Meyerson, Matthew, Wilson, Richard K, Ding, Li, Getz, Gad, Wheeler, David A, Mardis, Elaine R, McLellan, Michael D, Cibulskis, Kristian, Sougnez, Carrie, Greulich, Heidi, Muzny, Donna M, Morgan, Margaret B, Fulton, Lucinda, Fulton, Robert S, Zhang, Qunyuan, Wendl, Michael C, Lawrence, Michael S, Larson, David E, Chen, Ken, Dooling, David J, Sabo, Aniko, Hawes, Alicia C, Shen, Hua, Jhangiani, Shalini N, Lewis, Lora R, Hall, Otis, Zhu, Yiming, Mathew, Tittu, Ren, Yanru, Yao, Jiqiang, Scherer, Steven E, Clerc, Kerstin, Metcalf, Ginger A, Ng, Brian, Milosavljevic, Aleksandar, Gonzalez-Garay, Manuel L, Osborne, John R, Meyer, Rick, Shi, Xiaoqi, Tang, Yuzhu, Koboldt, Daniel C, Lin, Ling, Abbott, Rachel, Miner, Tracie L, Pohl, Craig, Fewell, Ginger, Haipek, Carrie, Schmidt, Heather, Dunford-Shore, Brian H, Kraja, Aldi, Crosby, Seth D, Sawyer, Christopher S, Vickery, Tammi, Sander, Sacha, Robinson, Jody, Winckler, Wendy, Baldwin, Jennifer, Chirieac, Lucian R, Dutt, Amit, Fennell, Tim, Hanna, Megan, Johnson, Bruce E, Onofrio, Robert C, Thomas, Roman K, Tonon, Giovanni, Weir, Barbara A, Zhao, Xiaojun, Ziaugra, Liuda, Zody, Michael C, Giordano, Thomas, Orringer, Mark B, Roth, Jack A, Spitz, Margaret R, Wistuba, Ignacio I, Ozenberger, Bradley, Good, Peter J, Chang, Andrew C, Beer, David G, Watson, Mark A, Ladanyi, Marc, Broderick, Stephen, Yoshizawa, Akihiko, Travis, William D, Pao, William, Province, Michael A, Weinstock, George M, Varmus, Harold E, Gabriel, Stacey B, Lander, Eric S, Gibbs, Richard A

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