Sensitive, High-Throughput HLA-I and HLA-II Immunopeptidomics Using Parallel Accumulation-Serial Fragmentation Mass Spectrometry von Phulphagar, Kshiti Meera, Ctortecka, Claudia, Jacome, Alvaro Sebastian Vaca, Klaeger, Susan, Verzani, Eva K., Hernandez, Gabrielle M., Udeshi, Namrata D., Clauser, Karl R., Abelin, Jennifer G., Carr, Steven A.

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Workflow enabling deepscale immunopeptidome, proteome, ubiquitylome, phosphoproteome, and acetylome analyses of sample-limited tissues von Abelin, Jennifer G., Bergstrom, Erik J., Rivera, Keith D., Taylor, Hannah B., Klaeger, Susan, Xu, Charles, Verzani, Eva K., Jackson White, C., Woldemichael, Hilina B., Virshup, Maya, Olive, Meagan E., Maynard, Myranda, Vartany, Stephanie A., Allen, Joseph D., Phulphagar, Kshiti, Harry Kane, M., Rachimi, Suzanna, Mani, D. R., Gillette, Michael A., Satpathy, Shankha, Clauser, Karl R., Udeshi, Namrata D., Carr, Steven A.

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Targeting the aminopeptidase ERAP enhances antitumor immunity by disrupting the NKG2A-HLA-E inhibitory checkpoint von Tsao, Hsiao-Wei, Anderson, Seth, Finn, Kenneth J., Perera, Jonathan J., Pass, Lomax F., Schneider, Emily M., Jiang, Aiping, Fetterman, Rachel, Chuong, Cun Lan, Kozuma, Kaiya, Stickler, Marcia M., Creixell, Marc, Klaeger, Susan, Phulphagar, Kshiti Meera, Rachimi, Suzanna, Verzani, Eva K., Olsson, Niclas, Dubrot, Juan, Pech, Matthew F., Silkworth, Whitney, Lane-Reticker, Sarah Kate, Allen, Peter M., Ibrahim, Kyrellos, Knudsen, Nelson H., Cheng, Andrew Y., Long, Adrienne H., Ebrahimi-Nik, Hakimeh, Kim, Sarah Y., Du, Peter P., Iracheta-Vellve, Arvin, Robitschek, Emily J., Suermondt, Juliette S.M.T., Davis, Thomas G.R., Wolfe, Clara H., Atluri, Trisha, Olander, Kira E., Rush, Jason S., Sundberg, Thomas B., McAllister, Fiona E., Abelin, Jennifer G., Firestone, Ari, Stokoe, David, Carr, Steven A., Harding, Fiona A., Yates, Kathleen B., Manguso, Robert T.

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Abstract 2369: Discovering and assessing novel epitopes of Bordetella pertussis to improve the whooping cough vaccine through immunopeptidome analysis and immune recognition assays von Hernandez, Gabrielle, Shamseldin, Mohamed, Verzani, Eva, Clauser, Karl, Hall, Jesse, Carr, Steven, Abelin, Jennifer, Dubey, Purnima

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Development of a next generation pertussis vaccine: An unbiased biochemical approach to identify novel CD4+ T cell recognized antigens from Bordetella pertussis von Shamseldin, Mohamed Medhat, Hernandez, Gabrielle, Verzani, Eva, Hall, Jesse M, Caution, Kyle J, Carr, Steven A, Deora, Rajendar, Abbelin, Jenn, Dubey, Purnima

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1040-B Identifying tumor-associated antigens in different stages of multiple myeloma using low input HLA immunopeptidomics von Hernandez, Gabrielle M, Taylor, Hannah, Verzani, Eva K, Ctortecka, Claudia, Berrios Nolasco, David A, Clauser, Karl R, Udeshi, Namrata D, Abelin, Jennifer G, Manasanch, Elisabet, Carr, Steven A

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1408 Non-canonical peptide sources broaden the landscape of targetable antigens in pancreatic cancer von Ely, Zackery A, Kulstad, Zachary J, Abelin, Jennifer G, Verzani, Eva K, Addepalli, Sudarsana, Clauser, Karl, Kapner, Kevin S, Hennessey, Connor J, Agus, Miles, Klaeger, Susan, Jaeger, Alex M, Su, Jennifer, Greenberg, Philip D, Aguirre, Andrew J, Carr, Steven, Jacks, Tyler, Freed-Pastor, William

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Abstract C014: Broadening the repertoire of PDAC-specific targets for immune-based therapy through high-resolution immunopeptidomics von Ely, Zackery A., Freed-Pastor, William A., Kulstad, Zachary J., Abelin, Jennifer G., Verzani, Eva, Kapner, Kevin S., Klaeger, Susan, Clauser, Karl R., Agus, Miles, Jaeger, Alex M., Pattada, Nimisha B., Bhutkar, Arjun, Aguirre, Andrew J., Carr, Steven A., Jacks, Tyler

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Abstract A038: Non-canonical MHC class I-associated antigens in pancreatic cancer von Ely, Zackery A., Kulstad, Zachary J., Verzani, Eva K., Abelin, Jennifer G., Addepalli, Sudarsana, Clauser, Karl R., Casarrubios, Marta, Kapner, Kevin S., Agus, Miles P., Hennessey, Connor J., Hadrup, Sine R., Klaeger, Susan, Su, Jennifer, Jaeger, Alex M., Wolpin, Brian M., Raghavan, Srivatsan, Greenberg, Philip D., Aguirre, Andrew J., Carr, Steven A., Jacks, Tyler, Freed-Pastor, William A.

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TopKLists: a comprehensive R package for statistical inference, stochastic aggregation, and visualization of multiple omics ranked lists von Schimek, Michael G., Budinská, Eva, Kugler, Karl G., Švendová, Vendula, Ding, Jie, Lin, Shili

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NATURAL SPEAKING AND HOW TO ASSESS IT von Pajupuu, Hille, Kerge, Krista, Meister, Lya, Asu, Eva Liina, Alp, Pilvi

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Author index

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Correlation of mRNA-PCA3 urine levels with the new grading system in prostate cancer von Rodon, Natalia, Trias, Isabel, Verdú, Montse, Calvo, Miquel, Banus, Josep Mª, Puig, Xavier

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