Enhancer hubs and loop collisions identified from single-allele topologies von Allahyar, Amin, Vermeulen, Carlo, Bouwman, Britta A. M., Krijger, Peter H. L., Verstegen, Marjon J. A. M., Geeven, Geert, van Kranenburg, Melissa, Pieterse, Mark, Straver, Roy, Haarhuis, Judith H. I., Jalink, Kees, Teunissen, Hans, Renkens, Ivo J., Kloosterman, Wigard P., Rowland, Benjamin D., de Wit, Elzo, de Ridder, Jeroen, de Laat, Wouter

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Local compartment changes and regulatory landscape alterations in histone H1-depleted cells von Geeven, Geert, Zhu, Yun, Kim, Byung Ju, Bartholdy, Boris A, Yang, Seung-Min, Macfarlan, Todd S, Gifford, Wesley D, Pfaff, Samuel L, Verstegen, Marjon J A M, Pinto, Hugo, Vermunt, Marit W, Creyghton, Menno P, Wijchers, Patrick J, Stamatoyannopoulos, John A, Skoultchi, Arthur I, de Laat, Wouter

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Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies von Vermeulen, Carlo, Allahyar, Amin, Bouwman, Britta A. M., Krijger, Peter H. L., Verstegen, Marjon J. A. M., Geeven, Geert, Valdes-Quezada, Christian, Renkens, Ivo, Straver, Roy, Kloosterman, Wigard P., de Ridder, Jeroen, de Laat, Wouter

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Exploring policy options to spur the expansion of ethanol production and consumption in Brazil: An agent-based modeling approach von Moncada, J.A., Verstegen, J.A., Posada, J.A., Junginger, M., Lukszo, Z., Faaij, A., Weijnen, M.

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Building regulatory landscapes reveals that an enhancer can recruit cohesin to create contact domains, engage CTCF sites and activate distant genes von Rinzema, Niels J., Sofiadis, Konstantinos, Tjalsma, Sjoerd J. D., Verstegen, Marjon J. A. M., Oz, Yuva, Valdes-Quezada, Christian, Felder, Anna-Karina, Filipovska, Teodora, van der Elst, Stefan, de Andrade dos Ramos, Zaria, Han, Ruiqi, Krijger, Peter H. L., de Laat, Wouter

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The pluripotent genome in three dimensions is shaped around pluripotency factors von de Wit, Elzo, Bouwman, Britta A. M., Zhu, Yun, Klous, Petra, Splinter, Erik, Verstegen, Marjon J. A. M., Krijger, Peter H. L., Festuccia, Nicola, Nora, Elphège P., Welling, Maaike, Heard, Edith, Geijsen, Niels, Poot, Raymond A., Chambers, Ian, de Laat, Wouter

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Robust 4C-seq data analysis to screen for regulatory DNA interactions von van de Werken, Harmen J G, Landan, Gilad, Holwerda, Sjoerd J B, Hoichman, Michael, Klous, Petra, Chachik, Ran, Splinter, Erik, Valdes-Quezada, Christian, Öz, Yuva, Bouwman, Britta A M, Verstegen, Marjon J A M, de Wit, Elzo, Tanay, Amos, de Laat, Wouter

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Combining empirical and theory-based land-use modelling approaches to assess economic potential of biofuel production avoiding iLUC: Argentina as a case study von Diogo, V., van der Hilst, F., van Eijck, J., Verstegen, J.A., Hilbert, J., Carballo, S., Volante, J., Faaij, A.

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CTCF Binding Polarity Determines Chromatin Looping von de Wit, Elzo, Vos, Erica S.M., Holwerda, Sjoerd J.B., Valdes-Quezada, Christian, Verstegen, Marjon J.A.M., Teunissen, Hans, Splinter, Erik, Wijchers, Patrick J., Krijger, Peter H.L., de Laat, Wouter

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Supply chain optimization of sugarcane first generation and eucalyptus second generation ethanol production in Brazil von Jonker, J.G.G., Junginger, H.M., Verstegen, J.A., Lin, T., Rodríguez, L.F., Ting, K.C., Faaij, A.P.C., van der Hilst, F.

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Interplay between CTCF boundaries and a super enhancer controls cohesin extrusion trajectories and gene expression von Vos, Erica S.M., Valdes-Quezada, Christian, Huang, Yike, Allahyar, Amin, Verstegen, Marjon J.A.M., Felder, Anna-Karina, van der Vegt, Floor, Uijttewaal, Esther C.H., Krijger, Peter H.L., de Laat, Wouter

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Cause and Consequence of Tethering a SubTAD to Different Nuclear Compartments von Wijchers, Patrick J., Krijger, Peter H.L., Geeven, Geert, Zhu, Yun, Denker, Annette, Verstegen, Marjon J.A.M., Valdes-Quezada, Christian, Vermeulen, Carlo, Janssen, Mark, Teunissen, Hans, Anink-Groenen, Lisette C.M., Verschure, Pernette J., de Laat, Wouter

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Sensitive Monogenic Noninvasive Prenatal Diagnosis by Targeted Haplotyping von Vermeulen, Carlo, Geeven, Geert, de Wit, Elzo, Verstegen, Marjon J.A.M., Jansen, Rumo P.M., van Kranenburg, Melissa, de Bruijn, Ewart, Pulit, Sara L., Kruisselbrink, Evelien, Shahsavari, Zahra, Omrani, Davood, Zeinali, Fatemeh, Najmabadi, Hossein, Katsila, Theodora, Vrettou, Christina, Patrinos, George P., Traeger-Synodinos, Joanne, Splinter, Erik, Beekman, Jeffrey M., Kheradmand Kia, Sima, te Meerman, Gerard J., Ploos van Amstel, Hans Kristian, de Laat, Wouter

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(Mis) understanding your native language: Regional accent impedes processing of information status von Arnhold, Anja, Porretta, Vincent, Chen, Aoju, Verstegen, Saskia A.J.M., Mok, Ivy, Järvikivi, Juhani

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Robust detection of translocations in lymphoma FFPE samples using targeted locus capture-based sequencing von Allahyar, Amin, Pieterse, Mark, Swennenhuis, Joost, Los-de Vries, G. Tjitske, Yilmaz, Mehmet, Leguit, Roos, Meijers, Ruud W. J., van der Geize, Robert, Vermaat, Joost, Cleven, Arjen, van Wezel, Tom, Diepstra, Arjan, van Kempen, Léon C., Hijmering, Nathalie J., Stathi, Phylicia, Sharma, Milan, Melquiond, Adrien S. J., de Vree, Paula J. P., Verstegen, Marjon J. A. M., Krijger, Peter H. L., Hajo, Karima, Simonis, Marieke, Rakszewska, Agata, van Min, Max, de Jong, Daphne, Ylstra, Bauke, Feitsma, Harma, Splinter, Erik, de Laat, Wouter

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Elevated enhancer-oncogene contacts and higher oncogene expression levels by recurrent CTCF inactivating mutations in acute T cell leukemia von Smits, Willem K., Vermeulen, Carlo, Hagelaar, Rico, Kimura, Shunsuke, Vroegindeweij, Eric M., Buijs-Gladdines, Jessica G.C.A.M., van de Geer, Ellen, Verstegen, Marjon J.A.M., Splinter, Erik, van Reijmersdal, Simon V., Buijs, Arjan, Galjart, Niels, van Eyndhoven, Winfried, van Min, Max, Kuiper, Roland, Kemmeren, Patrick, Mullighan, Charles G., de Laat, Wouter, Meijerink, Jules P.P.

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Allelic exclusion of the immunoglobulin heavy chain locus is independent of its nuclear localization in mature B cells von Holwerda, Sjoerd J B, van de Werken, Harmen J G, Ribeiro de Almeida, Claudia, Bergen, Ingrid M, de Bruijn, Marjolein J W, Verstegen, Marjon J A M, Simonis, Marieke, Splinter, Erik, Wijchers, Patrick J, Hendriks, Rudi W, de Laat, Wouter

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Differences in farmers’ perception of opportunities for farm development von Methorst, R.G. (Ron), Roep, D. (Dirk), Verhees, F.J.H.M. (Frans), Verstegen, J.A.A.M. (Jos)

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Exploring policy options to spur the expansion of ethanol production and consumption in Brazil: An agent-based modeling approach von Moncada, J. A, Verstegen, J. A, Posada, J. A, Junginger, M, Lukszo, Z, Faaij, A, Weijnen, M

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Targeted sequencing by proximity ligation for comprehensive variant detection and local haplotyping von de Vree, Paula J P, de Wit, Elzo, Yilmaz, Mehmet, van de Heijning, Monique, Klous, Petra, Verstegen, Marjon J A M, Wan, Yi, Teunissen, Hans, Krijger, Peter H L, Geeven, Geert, Eijk, Paul P, Sie, Daoud, Ylstra, Bauke, Hulsman, Lorette O M, van Dooren, Marieke F, van Zutven, Laura J C M, van den Ouweland, Ans, Verbeek, Sjef, van Dijk, Ko Willems, Cornelissen, Marion, Das, Atze T, Berkhout, Ben, Sikkema-Raddatz, Birgit, van den Berg, Eva, van der Vlies, Pieter, Weening, Desiree, den Dunnen, Johan T, Matusiak, Magdalena, Lamkanfi, Mohamed, Ligtenberg, Marjolijn J L, ter Brugge, Petra, Jonkers, Jos, Foekens, John A, Martens, John W, van der Luijt, Rob, van Amstel, Hans Kristian Ploos, van Min, Max, Splinter, Erik, de Laat, Wouter

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