Gut microbiota interspecies interactions shape the response of Clostridioides difficile to clinically relevant antibiotics von Hromada, Susan, Venturelli, Ophelia S

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Deciphering microbial interactions in synthetic human gut microbiome communities von Venturelli, Ophelia S, Carr, Alex V, Fisher, Garth, Hsu, Ryan H, Lau, Rebecca, Bowen, Benjamin P, Hromada, Susan, Northen, Trent, Arkin, Adam P

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Design of synthetic human gut microbiome assembly and butyrate production von Clark, Ryan L., Connors, Bryce M., Stevenson, David M., Hromada, Susan E., Hamilton, Joshua J., Amador-Noguez, Daniel, Venturelli, Ophelia S.

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Investigating the dynamics of microbial consortia in spatially structured environments von Gupta, Sonali, Ross, Tyler D., Gomez, Marcella M., Grant, Job L., Romero, Philip A., Venturelli, Ophelia S.

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Population diversification in a yeast metabolic program promotes anticipation of environmental shifts von Venturelli, Ophelia S, Zuleta, Ignacio, Murray, Richard M, El-Samad, Hana

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Integrating a tailored recurrent neural network with Bayesian experimental design to optimize microbial community functions von Thompson, Jaron C, Zavala, Victor M, Venturelli, Ophelia S

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Surviving COVID-19 in Bergamo province: a post-acute outpatient re-evaluation von Venturelli, Serena, Benatti, Simone Vasilij, Casati, Monica, Binda, Francesca, Zuglian, Gianluca, Imeri, Gianluca, Conti, Caterina, Biffi, Ave Maria, Spada, Maria Simonetta, Bondi, Emi, Camera, Giorgia, Severgnini, Roberta, Giammarresi, Andrea, Marinaro, Claudia, Rossini, Alessandro, Bonaffini, Pietro Andrea, Guerra, Giovanni, Bellasi, Antonio, Cesa, Simonetta, Rizzi, Marco

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Scalable nonlinear programming framework for parameter estimation in dynamic biological system models von Shin, Sungho, Venturelli, Ophelia S, Zavala, Victor M

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Flexible Bayesian modelling in dichotomous item response theory using mixtures of skewed item curves von Gonçalves, Flávio B., Venturelli S. L., Juliane, Loschi, Rosangela H.

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Negative interactions determine Clostridioides difficile growth in synthetic human gut communities von Hromada, Susan, Qian, Yili, Jacobson, Tyler B, Clark, Ryan L, Watson, Lauren, Safdar, Nasia, Amador‐Noguez, Daniel, Venturelli, Ophelia S

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Elucidating human gut microbiota interactions that robustly inhibit diverse Clostridioides difficile strains across different nutrient landscapes von Sulaiman, Jordy Evan, Thompson, Jaron, Qian, Yili, Vivas, Eugenio I., Diener, Christian, Gibbons, Sean M., Safdar, Nasia, Venturelli, Ophelia S.

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Programming bacteria for multiplexed DNA detection von Cheng, Yu-Yu, Chen, Zhengyi, Cao, Xinyun, Ross, Tyler D., Falbel, Tanya G., Burton, Briana M., Venturelli, Ophelia S.

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Microbial Interaction Network Inference in Microfluidic Droplets von Hsu, Ryan H., Clark, Ryan L., Tan, Jin Wen, Ahn, John C., Gupta, Sonali, Romero, Philip A., Venturelli, Ophelia S.

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Recurrent neural networks enable design of multifunctional synthetic human gut microbiome dynamics von Baranwal, Mayank, Clark, Ryan L, Thompson, Jaron, Sun, Zeyu, Hero, Alfred O, Venturelli, Ophelia S

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Efficient plasmid transfer via natural competence in a microbial co‐culture von Cheng, Yu‐Yu, Zhou, Zhichao, Papadopoulos, James M, Zuke, Jason D, Falbel, Tanya G, Anantharaman, Karthik, Burton, Briana M, Venturelli, Ophelia S

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Programming mRNA decay to modulate synthetic circuit resource allocation von Venturelli, Ophelia S., Tei, Mika, Bauer, Stefan, Chan, Leanne Jade G., Petzold, Christopher J., Arkin, Adam P

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Synergistic dual positive feedback loops established by molecular sequestration generate robust bimodal response von Venturelli, Ophelia S, El-Samad, Hana, Murray, Richard M

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The pro-longevity gene FoxO3 is a direct target of the p53 tumor suppressor von Renault, V M, Thekkat, P U, Hoang, K L, White, J L, Brady, C A, Kenzelmann Broz, D, Venturelli, O S, Johnson, T M, Oskoui, P R, Xuan, Z, Santo, E E, Zhang, M Q, Vogel, H, Attardi, L D, Brunet, A

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Carbohydrate complexity limits microbial growth and reduces the sensitivity of human gut communities to perturbations von Ostrem Loss, Erin, Thompson, Jaron, Cheung, Pak Lun Kevin, Qian, Yili, Venturelli, Ophelia S.

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Towards a deeper understanding of microbial communities: integrating experimental data with dynamic models von Qian, Yili, Lan, Freeman, Venturelli, Ophelia S

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