ProbCD: enrichment analysis accounting for categorization uncertainty von Vêncio, Ricardo Z N, Shmulevich, Ilya

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Sugarcane genes associated with sucrose content von Papini-Terzi, Flávia S, Rocha, Flávia R, Vêncio, Ricardo Z N, Felix, Juliana M, Branco, Diana S, Waclawovsky, Alessandro J, Del Bem, Luiz E V, Lembke, Carolina G, Costa, Maximiller D L, Nishiyama, Jr, Milton Y, Vicentini, Renato, Vincentz, Michel G A, Ulian, Eugênio C, Menossi, Marcelo, Souza, Glaucia M

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A UML profile for the OBO relation ontology von Guardia, Gabriela D A, Vêncio, Ricardo Z N, de Farias, Cléver R G

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Semantic integration of gene expression analysis tools and data sources using software connectors von Miyazaki, Flávia A, Guardia, Gabriela D A, Vêncio, Ricardo Z N, de Farias, Cléver R G

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BayGO: Bayesian analysis of ontology term enrichment in microarray data von Vêncio, Ricardo Z N, Koide, Tie, Gomes, Suely L, Pereira, Carlos A de B

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Bayesian model accounting for within-class biological variability in Serial Analysis of Gene Expression (SAGE) von Vêncio, Ricardo Z N, Brentani, Helena, Patrão, Diogo F C, Pereira, Carlos A B

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Simcluster: clustering enumeration gene expression data on the simplex space von Vêncio, Ricardo Z N, Varuzza, Leonardo, de B Pereira, Carlos A, Brentani, Helena, Shmulevich, Ilya

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ProbFAST: Probabilistic functional analysis system tool von Silva, Israel T, Vêncio, Ricardo Z N, Oliveira, Thiago Y K, Molfetta, Greice A, Silva, Jr, Wilson A

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Evaluation of reference-based two-color methods for measurement of gene expression ratios using spotted cDNA microarrays von Peixoto, Bernardo R, Vêncio, Ricardo Z N, Egidio, Camila M, Mota-Vieira, Luisa, Verjovski-Almeida, Sergio, Reis, Eduardo M

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Gene expression relationship between prostate cancer cells of Gleason 3, 4 and normal epithelial cells as revealed by cell type-specific transcriptomes von Pascal, Laura E, Vêncio, Ricardo Z N, Page, Laura S, Liebeskind, Emily S, Shadle, Christina P, Troisch, Pamela, Marzolf, Bruz, True, Lawrence D, Hood, Leroy E, Liu, Alvin Y

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Signal transduction-related responses to phytohormones and environmental challenges in sugarcane von Rocha, Flávia R, Papini-Terzi, Flávia S, Nishiyama, Jr, Milton Y, Vêncio, Ricardo Z N, Vicentini, Renato, Duarte, Rodrigo D C, de Rosa, Jr, Vicente E, Vinagre, Fabiano, Barsalobres, Carla, Medeiros, Ane H, Rodrigues, Fabiana A, Ulian, Eugênio C, Zingaretti, Sônia M, Galbiatti, João A, Almeida, Raul S, Figueira, Antonio V O, Hemerly, Adriana S, Silva-Filho, Marcio C, Menossi, Marcelo, Souza, Gláucia M

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Conversion of Prostate Adenocarcinoma to Small Cell Carcinoma-Like by Reprogramming von Borges, Gisely T., Vêncio, Eneida F., Quek, Sue-Ing, Chen, Adeline, Salvanha, Diego M., Vêncio, Ricardo Z.N., Nguyen, Holly M., Vessella, Robert L., Cavanaugh, Christopher, Ware, Carol B., Troisch, Pamela, Liu, Alvin Y.

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Gene expression down-regulation in CD90+ prostate tumor-associated stromal cells involves potential organ-specific genes von Pascal, Laura E, Goo, Young Ah, Vêncio, Ricardo Zn, Page, Laura S, Chambers, Amber A, Liebeskind, Emily S, Takayama, Thomas K, True, Lawrence D, Liu, Alvin Y

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Lineage relationship of prostate cancer cell types based on gene expression von Pascal, Laura E, Vêncio, Ricardo Zn, Vessella, Robert L, Ware, Carol B, Vêncio, Eneida F, Denyer, Gareth, Liu, Alvin Y

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Comparative Transcriptome Analysis of Listeria monocytogenes Strains of the Two Major Lineages Reveals Differences in Virulence, Cell Wall, and Stress Response von Severino, Patricia, Dussurget, Olivier, Vêncio, Ricardo Z.N, Dumas, Emilie, Garrido, Patricia, Padilla, Gabriel, Piveteau, Pascal, Lemaître, Jean-Paul, Kunst, Frank, Glaser, Philippe, Buchrieser, Carmen

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SIFTER-T: A scalable and optimized framework for the SIFTER phylogenomic method of probabilistic protein domain annotation von Almeida-e-Silva, Danillo C, Vencio, Ricardo ZN

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Processing of voided urine for prostate cancer RNA biomarker analysis von Quek, Sue-Ing, Wong, Olivia M., Chen, Adeline, Borges, Gisely T., Ellis, William J., Salvanha, Diego M., Vêncio, Ricardo Z.N., Weaver, Brandi, Ench, Yasmin M., Leach, Robin J., Thompson, Ian M., Liu, Alvin Y.

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The Iron Stimulon of Xylella fastidiosa Includes Genes for Type IV Pilus and Colicin V-Like Bacteriocins von ZAINI, Paulo A, FOGACA, Andréa C, LUPO, Fernanda G. N, NAKAYA, Helder I, VENCIO, Ricardo Z. N, DA SILVA, Aline M

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Gene Expression Profiling Reveals Regulation of ERK Phosphorylation by Androgen-Induced Tumor Suppressor U19/EAF2 in the Mouse Prostate von Su, Fei, Correa, Bruna R. S., Luo, Jianhua, Vencio, Ricardo Z. N., Pascal, Laura E., Wang, Zhou

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Global Gene Expression Analysis of the Heat Shock Response in the Phytopathogen Xylella fastidiosa von KOIDE, Tie, VENCIO, Ricardo Z. N, GOMES, Suely L

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