ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics von Silva, Ricardo R., Jourdan, Fabien, Salvanha, Diego M., Letisse, Fabien, Jamin, Emilien L., Guidetti-Gonzalez, Simone, Labate, Carlos A., Vêncio, Ricardo Z. N.

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Systems biology approach predicts immunogenicity of the yellow fever vaccine in humans von Pulendran, Bali, Querec, Troy D, Akondy, Rama S, Lee, Eva K, Cao, Weiping, Nakaya, Helder I, Teuwen, Dirk, Pirani, Ali, Gernert, Kim, Deng, Jiusheng, Marzolf, Bruz, Kennedy, Kathleen, Wu, Haiyan, Bennouna, Soumaya, Oluoch, Herold, Miller, Joseph, Vencio, Ricardo Z, Mulligan, Mark, Aderem, Alan, Ahmed, Rafi

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Conditional deletion of ELL2 induces murine prostate intraepithelial neoplasia von Pascal, Laura E, Masoodi, Khalid Z, Liu, June, Qiu, Xiaonan, Song, Qiong, Wang, Yujuan, Zang, Yachen, Yang, Tiejun, Wang, Yao, Rigatti, Lora H, Chandran, Uma, Colli, Leandro M, Vencio, Ricardo Z N, Lu, Yi, Zhang, Jian, Wang, Zhou

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Mass spectrometry in plant metabolomics strategies: from analytical platforms to data acquisition and processing von Ernst, Madeleine, Silva, Denise Brentan, Silva, Ricardo Roberto, Vêncio, Ricardo Z N, Lopes, Norberto Peporine

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Vitamin D receptor activation is a feasible therapeutic target to impair adrenocortical tumorigenesis von Bueno, Ana Carolina, More, Candy Bellido, Marrero-Gutiérrez, Junier, de Almeida e Silva, Danillo C., Leal, Leticia Ferro, Montaldi, Ana Paula, Ramalho, Fernando Silva, Vêncio, Ricardo Zorzetto Nicoliello, de Castro, Margaret, Antonini, Sonir Roberto R.

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RNA-sequencing analysis of Trichophyton rubrum transcriptome in response to sublethal doses of acriflavine von Persinoti, Gabriela Felix, de Aguiar Peres, Nalu Teixeira, Jacob, Tiago Rinaldi, Rossi, Antonio, Vêncio, Ricardo Zorzetto, Martinez-Rossi, Nilce Maria

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Vitamin D receptor hypermethylation as a biomarker for pediatric adrenocortical tumors von Bueno, Ana Carolina, Stecchini, Mônica F, Marrero-Gutiérrez, Junier, More, Candy Bellido, Leal, Leticia Ferro, Gomes, Débora Cristiane, de Lima Neto, Daniel Ferreira, Brandalise, Silvia Regina, Cardinalli, Izilda Aparecida, Yunes, José Andres, Junqueira, Thais, Scrideli, Carlos Alberto, Molina, Carlos Augusto Fernandes, Ramalho, Fernando Silva, Tucci, Silvio, Coeli-Lacchini, Fernanda Borchers, Moreira, Ayrton Custodio, Ramalho, Leandra, Vêncio, Ricardo Zorzetto Nicoliello, De Castro, Margaret, Antonini, Sonir Roberto R

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Gene Expression Profiling Reveals Regulation of ERK Phosphorylation by Androgen-Induced Tumor Suppressor U19/EAF2 in the Mouse Prostate von Su, Fei, Correa, Bruna R. S., Luo, Jianhua, Vencio, Ricardo Z. N., Pascal, Laura E., Wang, Zhou

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DNA methylation is a comprehensive marker for pediatric adrenocortical tumors von Bueno, Ana Carolina, da Silva, Rui M P, Stecchini, Mônica F, Marrero-Gutiérrez, Junier, de Almeida e Silva, Danillo C, Cardinalli, Izilda, Scrideli, Carlos Alberto, Junqueira, Thais, Molina, Carlos A F, Ramalho, Fernando Silva, Tucci Jr, Silvio, Coeli-Lacchini, Fernanda Borchers, Moreira, Ayrton Custodio, Ramalho, Leandra N Z, Brandalise, Silvia, Yunes, José Andres, de Castro, Margaret, Vêncio, Ricardo Zorzetto Nicoliello, Antonini, Sonir R R

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Comparative Transcriptome Analysis of Listeria monocytogenes Strains of the Two Major Lineages Reveals Differences in Virulence, Cell Wall, and Stress Response von Severino, Patricia, Dussurget, Olivier, Vêncio, Ricardo Z.N, Dumas, Emilie, Garrido, Patricia, Padilla, Gabriel, Piveteau, Pascal, Lemaître, Jean-Paul, Kunst, Frank, Glaser, Philippe, Buchrieser, Carmen

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Integrating Methylome and Transcriptome Signatures Expands the Molecular Classification of the Pituitary Tumors von Silva-Júnior, Rui M Patrício da, Bueno, Ana Carolina, Martins, Clarissa Silva, Coelli-Lacchini, Fernanda, Ozaki, Jorge Guilherme Okanobo, Almeida-e-Silva, Danillo Cunha de, Marrero-Gutiérrez, Junier, Santos, Antônio Carlos dos, Garcia-Peral, Carlos, Machado, Hélio Rubens, Santos, Marcelo Volpon dos, Elias, Paula Lamparelli, Moreira, Ayrton C, Colli, Leandro M, Vêncio, Ricardo Z N, Antonini, Sonir R, de Castro, Margaret

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Transcription start site associated RNAs (TSSaRNAs) are ubiquitous in all domains of life von Zaramela, Livia S, Vêncio, Ricardo Z N, ten-Caten, Felipe, Baliga, Nitin S, Koide, Tie

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Lineage relationship between prostate adenocarcinoma and small cell carcinoma von Kanan, Adelle D, Corey, Eva, Vêncio, Ricardo Z N, Ishwar, Arjun, Liu, Alvin Y

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Convergence Analysis of a New Self Organizing Map Based Optimization (SOMO) Algorithm von Khan, Atlas, Xue, Li Zheng, Wei, Wu, Qu, YanPeng, Hussain, Amir, Vencio, Ricardo Z. N.

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Age-Dependent Signature of Metallothionein Expression in Primary CD4 T Cell Responses Is Due to Sustained Zinc Signaling von Lee, Won-Woo, Cui, Dapeng, Czesnikiewicz-Guzik, Marta, Vencio, Ricardo Z.N., Shmulevich, Ilya, Aderem, Alan, Weyand, Cornelia M., Goronzy, Jörg J.

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Plasmodium vivax spleen-dependent genes encode antigens associated with cytoadhesion and clinical protection von Fernandez-Becerra, Carmen, Bernabeu, Maria, Castellanos, Angélica, Correa, Bruna R., Obadia, Thomas, Ramirez, Miriam, Rui, Edmilson, Hentzschel, Franziska, López-Montañés, Maria, Ayllon-Hermida, Alberto, Martin-Jaular, Lorena, Elizalde-Torrent, Aleix, Siba, Peter, Vêncio, Ricardo Z., Arevalo-Herrera, Myriam, Herrera, Sócrates, Alonso, Pedro L., Mueller, Ivo, del Portillo, Hernando A.

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Bladder expression of CD cell surface antigens and cell-type-specific transcriptomes von Liu, Alvin Y, Vêncio, Ricardo Z. N, Page, Laura S, Ho, Melissa E, Loprieno, Michelle A, True, Lawrence D

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Conversion of Prostate Adenocarcinoma to Small Cell Carcinoma-Like by Reprogramming von Borges, Gisely T., Vêncio, Eneida F., Quek, Sue-Ing, Chen, Adeline, Salvanha, Diego M., Vêncio, Ricardo Z.N., Nguyen, Holly M., Vessella, Robert L., Cavanaugh, Christopher, Ware, Carol B., Troisch, Pamela, Liu, Alvin Y.

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A Methodology for the Development of RESTful Semantic Web Services for Gene Expression Analysis von Guardia, Gabriela D A, Pires, Luís Ferreira, Vêncio, Ricardo Z N, Malmegrim, Kelen C R, de Farias, Cléver R G

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SIFTER-T: A scalable and optimized framework for the SIFTER phylogenomic method of probabilistic protein domain annotation von Almeida-e-Silva, Danillo C, Vencio, Ricardo ZN

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