Mechanical properties of lipid bilayers from molecular dynamics simulation von Venable, Richard M., Brown, Frank L.H., Pastor, Richard W.

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CHARMM All-Atom Additive Force Field for Sphingomyelin: Elucidation of Hydrogen Bonding and of Positive Curvature von Venable, Richard M., Sodt, Alexander J., Rogaski, Brent, Rui, Huan, Hatcher, Elizabeth, MacKerell, Alexander D., Pastor, Richard W., Klauda, Jeffery B.

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Permeability of membranes in the liquid ordered and liquid disordered phases von Ghysels, An, Krämer, Andreas, Venable, Richard M., Teague, Walter E., Lyman, Edward, Gawrisch, Klaus, Pastor, Richard W.

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Update of the CHARMM All-Atom Additive Force Field for Lipids: Validation on Six Lipid Types von Klauda, Jeffery B, Venable, Richard M, Freites, J. Alfredo, O’Connor, Joseph W, Tobias, Douglas J, Mondragon-Ramirez, Carlos, Vorobyov, Igor, MacKerell, Alexander D, Pastor, Richard W

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Simulations of Anionic Lipid Membranes: Development of Interaction-Specific Ion Parameters and Validation Using NMR Data von Venable, Richard M, Luo, Yun, Gawrisch, Klaus, Roux, Benoît, Pastor, Richard W

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CHARMM Additive All-Atom Force Field for Glycosidic Linkages between Hexopyranoses von Guvench, Olgun, Hatcher, Elizabeth, Venable, Richard M, Pastor, Richard W, MacKerell, Alexander D

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Nonadditive Compositional Curvature Energetics of Lipid Bilayers von Sodt, A J, Venable, R M, Lyman, E, Pastor, R W

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Molecular Dynamics Studies of Polyethylene Oxide and Polyethylene Glycol: Hydrodynamic Radius and Shape Anisotropy von Lee, Hwankyu, Venable, Richard M., MacKerell, Alexander D., Pastor, Richard W.

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Semi-automated Optimization of the CHARMM36 Lipid Force Field to Include Explicit Treatment of Long-Range Dispersion von Yu, Yalun, Krämer, Andreas, Venable, Richard M, Simmonett, Andrew C, MacKerell, Alexander D, Klauda, Jeffery B, Pastor, Richard W, Brooks, Bernard R

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Additive empirical force field for hexopyranose monosaccharides von Guvench, Olgun, Greene, Shannon N, Kamath, Ganesh, Brady, John W, Venable, Richard M, Pastor, Richard W, Mackerell, Alexander D. Jr

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Lipid and Peptide Diffusion in Bilayers: The Saffman-Delbrück Model and Periodic Boundary Conditions von Venable, Richard M, Ingólfsson, Helgi I, Lerner, Michael G, Perrin, Jr, B Scott, Camley, Brian A, Marrink, Siewert J, Brown, Frank L H, Pastor, Richard W

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Determination of Biomembrane Bending Moduli in Fully Atomistic Simulations von Levine, Zachary A, Venable, Richard M, Watson, Max C, Lerner, Michael G, Shea, Joan-Emma, Pastor, Richard W, Brown, Frank L. H

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Membrane Permeability: Characteristic Times and Lengths for Oxygen and a Simulation-Based Test of the Inhomogeneous Solubility-Diffusion Model von De Vos, Oriana, Venable, Richard M, Van Hecke, Tanja, Hummer, Gerhard, Pastor, Richard W, Ghysels, An

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Molecular Dynamics Simulations of Membrane Permeability von Venable, Richard M, Krämer, Andreas, Pastor, Richard W

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High-Resolution Structures and Orientations of Antimicrobial Peptides Piscidin 1 and Piscidin 3 in Fluid Bilayers Reveal Tilting, Kinking, and Bilayer Immersion von Perrin, B. Scott, Tian, Ye, Fu, Riqiang, Grant, Christopher V, Chekmenev, Eduard Y, Wieczorek, William E, Dao, Alexander E, Hayden, Robert M, Burzynski, Caitlin M, Venable, Richard M, Sharma, Mukesh, Opella, Stanley J, Pastor, Richard W, Cotten, Myriam L

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Interactions of Water and Alkanes: Modifying Additive Force Fields to Account for Polarization Effects von Krämer, Andreas, Pickard, Frank C, Huang, Jing, Venable, Richard M, Simmonett, Andrew C, Reith, Dirk, Kirschner, Karl N, Pastor, Richard W, Brooks, Bernard R

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An ab Initio Study on the Torsional Surface of Alkanes and Its Effect on Molecular Simulations of Alkanes and a DPPC Bilayer von Klauda, Jeffery B, Brooks, Bernard R, MacKerell, Alexander D, Venable, Richard M, Pastor, Richard W

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CHARMM-GUI Membrane Builder toward realistic biological membrane simulations von Wu, Emilia L., Cheng, Xi, Jo, Sunhwan, Rui, Huan, Song, Kevin C., Dávila-Contreras, Eder M., Qi, Yifei, Lee, Jumin, Monje-Galvan, Viviana, Venable, Richard M., Klauda, Jeffery B., Im, Wonpil

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A Molecular Dynamics Study of the Response of Lipid Bilayers and Monolayers to Trehalose von Skibinsky, Anna, Venable, Richard M., Pastor, Richard W.

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Ion-Induced PIP2 Clustering with Martini3: Modification of Phosphate–Ion Interactions and Comparison with CHARMM36 von Jarin, Zack, Venable, Richard M., Han, Kyungreem, Pastor, Richard W.

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