MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data von Argelaguet, Ricard, Arnol, Damien, Bredikhin, Danila, Deloro, Yonatan, Velten, Britta, Marioni, John C, Stegle, Oliver

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Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets von Argelaguet, Ricard, Velten, Britta, Arnol, Damien, Dietrich, Sascha, Zenz, Thorsten, Marioni, John C, Buettner, Florian, Huber, Wolfgang, Stegle, Oliver

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Identifying temporal and spatial patterns of variation from multimodal data using MEFISTO von Velten, Britta, Braunger, Jana M., Argelaguet, Ricard, Arnol, Damien, Wirbel, Jakob, Bredikhin, Danila, Zeller, Georg, Stegle, Oliver

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Mechanistic insights into transcription factor cooperativity and its impact on protein-phenotype interactions von Ibarra, Ignacio L., Hollmann, Nele M., Klaus, Bernd, Augsten, Sandra, Velten, Britta, Hennig, Janosch, Zaugg, Judith B.

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Multicellular factor analysis of single-cell data for a tissue-centric understanding of disease von Ramirez Flores, Ricardo Omar, Lanzer, Jan David, Dimitrov, Daniel, Velten, Britta, Saez-Rodriguez, Julio

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Spatial multiomics map of trophoblast development in early pregnancy von Arutyunyan, Anna, Roberts, Kenny, Troulé, Kevin, Wong, Frederick C. K., Sheridan, Megan A., Kats, Ilia, Garcia-Alonso, Luz, Velten, Britta, Hoo, Regina, Ruiz-Morales, Elias R., Sancho-Serra, Carmen, Shilts, Jarrod, Handfield, Louis-Francois, Marconato, Luca, Tuck, Elizabeth, Gardner, Lucy, Mazzeo, Cecilia Icoresi, Li, Qian, Kelava, Iva, Wright, Gavin J., Prigmore, Elena, Teichmann, Sarah A., Bayraktar, Omer Ali, Moffett, Ashley, Stegle, Oliver, Turco, Margherita Y., Vento-Tormo, Roser

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The changing career paths of PhDs and postdocs trained at EMBL von Lu, Junyan, Velten, Britta, Klaus, Bernd, Ramm, Mauricio, Huber, Wolfgang, Coulthard-Graf, Rachel

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Principles and challenges of modeling temporal and spatial omics data von Velten, Britta, Stegle, Oliver

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Survey of ex vivo drug combination effects in chronic lymphocytic leukemia reveals synergistic drug effects and genetic dependencies von Lukas, Marina, Velten, Britta, Sellner, Leopold, Tomska, Katarzyna, Hüellein, Jennifer, Walther, Tatjana, Wagner, Lena, Muley, Carolin, Wu, Bian, Oleś, Małgorzata, Dietrich, Sascha, Jethwa, Alexander, Bohnenberger, Hanibal, Lu, Junyan, Huber, Wolfgang, Zenz, Thorsten

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Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes von Velten, Britta, Huber, Wolfgang

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MOFA plus : a statistical framework for comprehensive integration of multi-modal single-cell data von Argelaguet, Ricard, Arnol, Damien, Bredikhin, Danila, Deloro, Yonatan, Velten, Britta, Marioni, John C., Stegle, Oliver

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FISHFactor: a probabilistic factor model for spatial transcriptomics data with subcellular resolution von Walter, Florin C, Stegle, Oliver, Velten, Britta

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Guide assignment in single-cell CRISPR screens using crispat von Braunger, Jana M, Velten, Britta

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Gene expression across mammalian organ development von Cardoso-Moreira, Margarida, Halbert, Jean, Valloton, Delphine, Velten, Britta, Chen, Chunyan, Shao, Yi, Liechti, Angélica, Ascenção, Kelly, Rummel, Coralie, Ovchinnikova, Svetlana, Mazin, Pavel V., Xenarios, Ioannis, Harshman, Keith, Mort, Matthew, Cooper, David N., Sandi, Carmen, Soares, Michael J., Ferreira, Paula G., Afonso, Sandra, Carneiro, Miguel, Turner, James M. A., VandeBerg, John L., Fallahshahroudi, Amir, Jensen, Per, Behr, Rüdiger, Lisgo, Steven, Lindsay, Susan, Khaitovich, Philipp, Huber, Wolfgang, Baker, Julie, Anders, Simon, Zhang, Yong E., Kaessmann, Henrik

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Developmental Gene Expression Differences between Humans and Mammalian Models von Cardoso-Moreira, Margarida, Sarropoulos, Ioannis, Velten, Britta, Mort, Matthew, Cooper, David N., Huber, Wolfgang, Kaessmann, Henrik

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In situ analysis of osmolyte mechanisms of proteome thermal stabilization von Pepelnjak, Monika, Velten, Britta, Näpflin, Nicolas, von Rosen, Tatjana, Palmiero, Umberto Capasso, Ko, Jeong Hoon, Maynard, Heather D., Arosio, Paolo, Weber-Ban, Eilika, de Souza, Natalie, Huber, Wolfgang, Picotti, Paola

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Drug-perturbation-based stratification of blood cancer von Dietrich, Sascha, Oleś, Małgorzata, Lu, Junyan, Sellner, Leopold, Anders, Simon, Velten, Britta, Wu, Bian, Hüllein, Jennifer, da Silva Liberio, Michelle, Walther, Tatjana, Wagner, Lena, Rabe, Sophie, Ghidelli-Disse, Sonja, Bantscheff, Marcus, Oleś, Andrzej K, Słabicki, Mikołaj, Mock, Andreas, Oakes, Christopher C, Wang, Shihui, Oppermann, Sina, Lukas, Marina, Kim, Vladislav, Sill, Martin, Benner, Axel, Jauch, Anna, Sutton, Lesley Ann, Young, Emma, Rosenquist, Richard, Liu, Xiyang, Jethwa, Alexander, Lee, Kwang Seok, Lewis, Joe, Putzker, Kerstin, Lutz, Christoph, Rossi, Davide, Mokhir, Andriy, Oellerich, Thomas, Zirlik, Katja, Herling, Marco, Nguyen-Khac, Florence, Plass, Christoph, Andersson, Emma, Mustjoki, Satu, von Kalle, Christof, Ho, Anthony D, Hensel, Manfred, Dürig, Jan, Ringshausen, Ingo, Zapatka, Marc, Huber, Wolfgang, Zenz, Thorsten

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Multi-Omics Factor Analysis-a framework for unsupervised integration of multi-omics data sets von Argelaguet, Ricard, Velten, Britta, Arnol, Damien, Dietrich, Sascha, Zenz, Thorsten, Marioni, John C, Buettner, Florian, Huber, Wolfgang, Stegle, Oliver

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Drug-perturbation-based stratification of blood cancer von Dietrich, Sascha, Oles, Matgorzata, Lu, Junyan, Sellner, Leopold, Anders, Simon, Velten, Britta, Wu, Bian, Hullein, Jennifer, Liberio, Michelle da Silva, Walther, Tatjana, Wagner, Lena, Rabe, Sophie, Ghidelli-Disse, Sonja, Bantscheff, Marcus, Oles, Andrzej K, Stabicki, Mikotaj, Mock, Andreas, Oakes, Christopher C, Wang, Shihui, Oppermann, Sina, Lukas, Marina, Kim, Vladislav, Sill, Martin, Benner, Axel, Jauch, Anna, Sutton, Lesley Ann, Young, Emma, Rosenquist, Richard, Liu, Xiyang, Jethwa, Alexander, Lee, Kwang Seok, Lewis, Joe, Putzker, Kerstin, Lutz, Christoph, Rossi, Davide, Mokhir, Andriy, Oellerich, Thomas, Zirlik, Katja, Herling, Marco, Nguyen-Khac, Florence, Plass, Christoph, Andersson, Emma, Mustjoki, Satu, von Kalle, Christof, Ho, Anthony D, Hensel, Manfred, Durig, Jan, Ringshausen, Ingo, Zapatka, Marc, Huber, Wolfgang, Zenz, Thorsten

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Adaptive penalization in high-dimensional regression and classification with external covariates using variational Bayes von Velten, Britta, Huber, Wolfgang

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