A curated database reveals trends in single-cell transcriptomics von Svensson, Valentine, da Veiga Beltrame, Eduardo, Pachter, Lior

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A Python library for probabilistic analysis of single-cell omics data von Gayoso, Adam, Lopez, Romain, Xing, Galen, Boyeau, Pierre, Valiollah Pour Amiri, Valeh, Hong, Justin, Wu, Katherine, Jayasuriya, Michael, Mehlman, Edouard, Langevin, Maxime, Liu, Yining, Samaran, Jules, Misrachi, Gabriel, Nazaret, Achille, Clivio, Oscar, Xu, Chenling, Ashuach, Tal, Gabitto, Mariano, Lotfollahi, Mohammad, Svensson, Valentine, da Veiga Beltrame, Eduardo, Kleshchevnikov, Vitalii, Talavera-López, Carlos, Pachter, Lior, Theis, Fabian J., Streets, Aaron, Jordan, Michael I., Regier, Jeffrey, Yosef, Nir

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Deletion of Stk11 and Fos in mouse BLA projection neurons alters intrinsic excitability and impairs formation of long-term aversive memory von Levitan, David, Liu, Chenghao, Yang, Tracy, Shima, Yasuyuki, Lin, Jian-You, Wachutka, Joseph, Marrero, Yasmin, Ali Marandi Ghoddousi, Ramin, Veiga Beltrame, Eduardo da, Richter, Troy A, Katz, Donald B, Nelson, Sacha B

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WormBase in 2022—data, processes, and tools for analyzing Caenorhabditis elegans von Davis, Paul, Zarowiecki, Magdalena, Arnaboldi, Valerio, Becerra, Andrés, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Cho, Jaehyoung, da Veiga Beltrame, Eduardo, Diamantakis, Stavros, Gao, Sibyl, Grigoriadis, Dionysis, Grove, Christian A, Harris, Todd W, Kishore, Ranjana, Le, Tuan, Lee, Raymond Y N, Luypaert, Manuel, Müller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Quinton-Tulloch, Mark, Raciti, Daniela, Rodgers, Faye H, Russell, Matthew, Schindelman, Gary, Singh, Archana, Stickland, Tim, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam J, Yook, Karen, Berriman, Matt, Howe, Kevin L, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Principles of open source bioinstrumentation applied to the poseidon syringe pump system von Booeshaghi, A. Sina, Beltrame, Eduardo da Veiga, Bannon, Dylan, Gehring, Jase, Pachter, Lior

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Single-nucleus resolution mapping of the adult C. elegans and its application to elucidate inter- and trans-generational response to alcohol von Truong, Lisa, Chen, Yen-Wei, Barrere-Cain, Rio, Levenson, Max T., Shuck, Karissa, Xiao, Wen, da Veiga Beltrame, Eduardo, Panter, Blake, Reich, Ella, Sternberg, Paul W., Yang, Xia, Allard, Patrick

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Author Correction: Principles of open source bioinstrumentation applied to the poseidon syringe pump system von Booeshaghi, A. Sina, Beltrame, Eduardo da Veiga, Bannon, Dylan, Gehring, Jase, Pachter, Lior

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WormBase single-cell tools von da Veiga Beltrame, Eduardo, Arnaboldi, Valerio, Sternberg, Paul W

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3D Printing of Biomolecular Models for Research and Pedagogy von Da Veiga Beltrame, Eduardo, Tyrwhitt-Drake, James, Roy, Ian, Shalaby, Raed, Suckale, Jakob, Pomeranz Krummel, Daniel

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Modular, efficient and constant-memory single-cell RNA-seq preprocessing von Melsted, Páll, Booeshaghi, A. Sina, Liu, Lauren, Gao, Fan, Lu, Lambda, Min, Kyung Hoi (Joseph), da Veiga Beltrame, Eduardo, Hjörleifsson, Kristján Eldjárn, Gehring, Jase, Pachter, Lior

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Harmonizing model organism data in the Alliance of Genome Resources von Agapite, Julie, Albou, Laurent-Philippe, Aleksander, Suzanne A, Alexander, Micheal, Anagnostopoulos, Anna V, Antonazzo, Giulia, Argasinska, Joanna, Arnaboldi, Valerio, Attrill, Helen, Becerra, Andrés, Bello, Susan M, Blake, Judith A, Blodgett, Olin, Bradford, Yvonne M, Bult, Carol J, Cain, Scott, Calvi, Brian R, Carbon, Seth, Chan, Juancarlos, Chen, Wen J, Michael Cherry, J, Cho, Jaehyoung, Christie, Karen R, Crosby, Madeline A, Davis, Paul, da Veiga Beltrame, Eduardo, De Pons, Jeffrey L, D’Eustachio, Peter, Diamantakis, Stavros, Dolan, Mary E, dos Santos, Gilberto, Douglass, Eric, Dunn, Barbara, Eagle, Anne, Ebert, Dustin, Engel, Stacia R, Fashena, David, Foley, Saoirse, Frazer, Ken, Gao, Sibyl, Gibson, Adam C, Gondwe, Felix, Goodman, Josh, Sian Gramates, L, Grove, Christian A, Hale, Paul, Harris, Todd, Thomas Hayman, G, Hill, David P, Howe, Douglas G, Howe, Kevin L, Hu, Yanhui, Jha, Sagar, Kadin, James A, Kaufman, Thomas C, Kalita, Patrick, Karra, Kalpana, Kishore, Ranjana, Kwitek, Anne E, Laulederkind, Stanley J F, Lee, Raymond, Longden, Ian, Luypaert, Manuel, MacPherson, Kevin A, Martin, Ryan, Marygold, Steven J, Matthews, Beverley, McAndrews, Monica S, Millburn, Gillian, Miyasato, Stuart, Motenko, Howie, Moxon, Sierra, Muller, Hans-Michael, Mungall, Christopher J, Muruganujan, Anushya, Mushayahama, Tremayne, Nalabolu, Harika S, Nash, Robert S, Ng, Patrick, Nuin, Paulo, Paddock, Holly, Paulini, Michael, Perrimon, Norbert, Pich, Christian, Quinton-Tulloch, Mark, Raciti, Daniela, Ramachandran, Sridhar, Richardson, Joel E, Gelbart, Susan Russo, Ruzicka, Leyla, Schaper, Kevin, Schindelman, Gary, Shimoyama, Mary, Simison, Matt, Shaw, David R, Shrivatsav, Ajay, Singer, Amy, Skrzypek, Marek, Smith, Constance M, Smith, Cynthia L

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3D Printing of Biomolecular Models for Research and Pedagogy von Da Veiga Beltrame, Eduardo, Tyrwhitt-Drake, James, Roy, Ian, Shalaby, Raed, Suckale, Jakob, Pomeranz Krummel, Daniel

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The BUS Format for Single-Cell RNA-Seq Processing and Analysis von Gao, Fan, da Veiga Beltrame, Eduardo, Gehring, Jase A, Edljarn Hjoerleifsson, Kristin E, Lu, Lambda, Melsted, Paull, Ntranos, Vasilis, Pachter, Lior, Svensson, Valentine

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Introduction to single-cell RNA-seq technologies von Beltrame, Eduardo Da Veiga, Jase Gehring, Svensson, Valentine, Dongyi Lu, Jialong Jiang, Thomson, Matt, Pachter, Lior

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Ben-David 2021 wormcells-viz data von da Veiga Beltrame, Eduardo

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Cao 2017 C. elegans L2 larvae scRNAseq dataset wrangled into WormBase standard anndata von da Veiga Beltrame, Eduardo

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CeNGEN scRNAseq dataset wrangled into standard WormBase anndata - 100k C. elegans cells FACS sorted for neurons in L4 larvae von da Veiga Beltrame, Eduardo

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Ben-David et al 2021 scRNAseq dataset wrangled into standard WormBase anndata- 55k cells profiled with 10xv2 at L2 larval stage von da Veiga Beltrame, Eduardo

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Packer et al 2019 scRNAseq dataset wrangled into standard WormBase anndata- 89k cells profiled with 10xv2 across multiple timepoints of development von da Veiga Beltrame, Eduardo

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EFFICIENT COMBINATORIAL BEAD BARCODING von Gehring, Jase, Tambe, Akshay, da Veiga Beltrame, Eduardo, Dilanyan, Taleen, Pachter, Lior S

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