The reactome pathway knowledgebase von Jassal, Bijay, Matthews, Lisa, Viteri, Guilherme, Gong, Chuqiao, Lorente, Pascual, Fabregat, Antonio, Sidiropoulos, Konstantinos, Cook, Justin, Gillespie, Marc, Haw, Robin, Loney, Fred, May, Bruce, Milacic, Marija, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

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The reactome pathway knowledgebase 2022 von Gillespie, Marc, Jassal, Bijay, Stephan, Ralf, Milacic, Marija, Rothfels, Karen, Senff-Ribeiro, Andrea, Griss, Johannes, Sevilla, Cristoffer, Matthews, Lisa, Gong, Chuqiao, Deng, Chuan, Varusai, Thawfeek, Ragueneau, Eliot, Haider, Yusra, May, Bruce, Shamovsky, Veronica, Weiser, Joel, Brunson, Timothy, Sanati, Nasim, Beckman, Liam, Shao, Xiang, Fabregat, Antonio, Sidiropoulos, Konstantinos, Murillo, Julieth, Viteri, Guilherme, Cook, Justin, Shorser, Solomon, Bader, Gary, Demir, Emek, Sander, Chris, Haw, Robin, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

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BioModels—15 years of sharing computational models in life science von Malik-Sheriff, Rahuman S, Glont, Mihai, Nguyen, Tung V N, Tiwari, Krishna, Roberts, Matthew G, Xavier, Ashley, Vu, Manh T, Men, Jinghao, Maire, Matthieu, Kananathan, Sarubini, Fairbanks, Emma L, Meyer, Johannes P, Arankalle, Chinmay, Varusai, Thawfeek M, Knight-Schrijver, Vincent, Li, Lu, Dueñas-Roca, Corina, Dass, Gaurhari, Keating, Sarah M, Park, Young M, Buso, Nicola, Rodriguez, Nicolas, Hucka, Michael, Hermjakob, Henning

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Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR von Varusai, Thawfeek M., Nguyen, Lan K.

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Protein-protein interactions generate hidden feedback and feed-forward loops to trigger bistable switches, oscillations and biphasic dose-responses von Varusai, Thawfeek M, Kolch, Walter, Kholodenko, Boris N, Nguyen, Lan K

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Toward community standards and software for Whole-Cell Modeling von Waltemath, Dagmar, Krantz, Marcus, Schrieber, Falk

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Ubiquitin chain specific auto-ubiquitination triggers sustained oscillation, bistable switches and excitable firing von Nguyen, Lan K, Zhao, Qi, Varusai, Thawfeek M, Kholodenko, Boris N

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The Reactome Pathway Knowledgebase von Fabregat, Antonio, Jupe, Steven, Matthews, Lisa, Sidiropoulos, Konstantinos, Gillespie, Marc, Garapati, Phani, Haw, Robin, Jassal, Bijay, Korninger, Florian, May, Bruce, Milacic, Marija, Roca, Corina Duenas, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Shorser, Solomon, Varusai, Thawfeek, Viteri, Guilherme, Weiser, Joel, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D'Eustachio, Peter

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The Reactome Pathway Knowledgebase 2024 von Milacic, Marija, Beavers, Deidre, Conley, Patrick, Gong, Chuqiao, Gillespie, Marc, Griss, Johannes, Haw, Robin, Jassal, Bijay, Matthews, Lisa, May, Bruce, Petryszak, Robert, Ragueneau, Eliot, Rothfels, Karen, Sevilla, Cristoffer, Shamovsky, Veronica, Stephan, Ralf, Tiwari, Krishna, Varusai, Thawfeek, Weiser, Joel, Wright, Adam, Wu, Guanming, Stein, Lincoln, Hermjakob, Henning, D’Eustachio, Peter

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Using Reactome to build an autophagy mechanism knowledgebase von Varusai, Thawfeek Mohamed, Jupe, Steven, Sevilla, Cristoffer, Matthews, Lisa, Gillespie, Marc, Stein, Lincoln, Wu, Guanming, D'Eustachio, Peter, Metzakopian, Emmanouil, Hermjakob, Henning

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COVID-19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms (vol 17, e10387, 2021) von Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta-Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gomez, Luis Cristobal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G., Drager, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Bornigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E., Shoemaker, Jason E., Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gokce Yagmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, D. A. B., Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic-Milacic, Marija, Senff-Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean-Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W., Maier, Dieter, Bauch, Angela, Gyori, Benjamin M., Bachman, John A., Vega, Carlos, Groues, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms von Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta-Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Gomez, Luis Cristobal Monraz, Somers, Julia, Hoch, Matti, Gupta, Shailendra Kumar, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, de Leon, Miguel Ponce, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G., Draeger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Boernigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E., Shoemaker, Jason E., Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gokce Yagmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, Devasahayam Arokia Balaya, Slenter, Denise, Martens, Marvin, Nhung Pham, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic-Milacic, Marija, Ribeiro, Andrea Senff, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean-Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W., Maier, Dieter, Bauch, Angela, Gyori, Benjamin M., Bachman, John A., Vega, Carlos, Groues, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun

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Interleukins and their signaling pathways in the Reactome biological pathway database von Jupe, Steve, Ray, Keith, Roca, Corina Duenas, Varusai, Thawfeek, Shamovsky, Veronica, Stein, Lincoln, D'Eustachio, Peter, Hermjakob, Henning

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COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms von Niarakis, Anna, Kuperstein, Inna, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Montrone, Corinna, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Scheel, Julia, Borlinghaus, Hanna, Schreiber, Falk, Montagud, Arnau, Funahashi, Akira, Hiki, Yusuke, Yamada, Takahiro G, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Ehrhart, Friederike, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Porras, Pablo, Licata, Luana, Sacco, Francesca, Nesterova, Anastasia, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Evelo, Chris T, Gillespie, Marc E, Valencia, Alfonso, Kitano, Hiroaki, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

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Protein-protein interactions generate hidden feedback and feed-forward loops to trigger bistable switches, oscillations and biphasic dose-responsesElectronic supplementary informat... von Varusai, Thawfeek M, Kolch, Walter, Kholodenko, Boris N, Nguyen, Lan K

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Reactome and ORCID-fine-grained credit attribution for community curation von Viteri, Guilherme, Matthews, Lisa, Varusai, Thawfeek, Gillespie, Marc, Milacic, Marija, Cook, Justin, Weiser, Joel, Shorser, Solomon, Sidiropoulos, Konstantinos, Fabregat, Antonio, Haw, Robin, Wu, Guanming, Stein, Lincoln, D'Eustachio, Peter, Hermjakob, Henning

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COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms von Ostaszewski, Marek, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Brauner, Barbara, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Schmiester, Leonard, Ackerman, Emily E, Shoemaker, Jason E, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Eijssen, Lars, Ehrhart, Friederike, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Orlic‐Milacic, Marija, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Sevilla, Cristoffer, Varusai, Thawfeek, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Gyori, Benjamin M, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, Luna, Augustin, Babur, Ozgun, Esteban‐Medina, Marina, Rian, Kinza, Helikar, Tomás, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Beckmann, Jacques S, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Stein, Lincoln D, Hermjakob, Henning, Dopazo, Joaquin, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard, the COVID‐19 Disease Map Community

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms von Ostaszewski, Marek, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta-Resendiz, Aurelio, Singh, Vidisha, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Brauner, Barbara, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Schmiester, Leonard, Ackerman, Emily E, Shoemaker, Jason E, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Eijssen, Lars, Ehrhart, Friederike, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Sevilla, Cristoffer, Varusai, Thawfeek, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Gyori, Benjamin M, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, Luna, Augustin, Babur, Ozgun, Esteban-Medina, Marina, Peña-Chilet, Maria, Rian, Kinza, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, Ballereau, Stephane, Naldi, Aurélien, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Beckmann, Jacques S, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Stein, Lincoln D, Hermjakob, Henning, Saez-Rodriguez, Julio, Dopazo, Joaquin, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms von Ostaszewski, Marek, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta-Resendiz, Aurelio, Singh, Vidisha, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Brauner, Barbara, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Schmiester, Leonard, Ackerman, Emily E, Shoemaker, Jason E, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Eijssen, Lars, Ehrhart, Friederike, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Senff Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Sevilla, Cristoffer, Varusai, Thawfeek, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Gyori, Benjamin M, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, Luna, Augustin, Babur, Ozgun, Esteban-Medina, Marina, Peña-Chilet, Maria, Rian, Kinza, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, Ballereau, Stephane, Naldi, Aurélien, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Beckmann, Jacques S, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Stein, Lincoln D, Hermjakob, Henning, Saez-Rodriguez, Julio, Dopazo, Joaquin, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard, COVID-19 Disease Map Community

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COVID19 Disease Map, a computational knowledge repository of virus-host interaction mechanisms von Ostaszewski, Marek, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta-Resendiz, Aurelio, Singh, Vidisha, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Brauner, Barbara, Gomez, Luis Cristobal Monraz, Somers, Julia, Hoch, Matti, Gupta, Shailendra Kumar, Scheel, Julia, Borlinghaus, Hanna, Montagud, Arnau, Funahashi, Akira, Hiki, Yusuke, Yamada, Takahiro G, Draeger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Boernigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Schmiester, Leonard, Ackerman, Emily E, Shoemaker, Jason E, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gokce Yagmur, Eijssen, Lars, Ehrhart, Friederike, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Ribeiro, Andrea Senff, Rothfels, Karen, Shamovsky, Veronica, Sevilla, Cristoffer, Varusai, Thawfeek, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Gyori, Benjamin M, Vega, Carlos, Groues, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, Luna, Augustin, Babur, Ozgun, Esteban-Medina, Marina, Pena-Chilet, Maria, Rian, Kinza, Helikar, Tomas, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, Naldi, Aurelien, Noel, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Auge, Franck, Beckmann, Jacques S, Wolkenhauer, Olaf, Wilighagen, Egon L, Pico, Alexander R, Stein, Lincoln D, Hermjakob, Henning, Saez-Rodriguez, Julio, Dopazo, Joaquin, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

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