PLAZA 4.0: an integrative resource for functional, evolutionary and comparative plant genomics von Van Bel, Michiel, Diels, Tim, Vancaester, Emmelien, Kreft, Lukasz, Botzki, Alexander, Van de Peer, Yves, Coppens, Frederik, Vandepoele, Klaas

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Computational approaches to unveiling ancient genome duplications von de Peer, Yves Van

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Decoding plant and animal genome plasticity from differential paleo-evolutionary patterns and processes von Murat, Florent, Van de Peer, Yves, Salse, Jérôme

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Whole-genome microsynteny-based phylogeny of angiosperms von Zhao, Tao, Zwaenepoel, Arthur, Xue, Jia-Yu, Kao, Shu-Min, Li, Zhen, Schranz, M. Eric, Van de Peer, Yves

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i-ADHoRe 3.0—fast and sensitive detection of genomic homology in extremely large data sets von Proost, Sebastian, Fostier, Jan, De Witte, Dieter, Dhoedt, Bart, Demeester, Piet, Van de Peer, Yves, Vandepoele, Klaas

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Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax von Wang, Zhen-Hui, Wang, Xin-Feng, Lu, Tianyuan, Li, Ming-Rui, Jiang, Peng, Zhao, Jing, Liu, Si-Tong, Fu, Xue-Qi, Wendel, Jonathan F., Van de Peer, Yves, Liu, Bao, Li, Lin-Feng

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Reciprocally Retained Genes in the Angiosperm Lineage Show the Hallmarks of Dosage Balance Sensitivity von Tasdighian, Setareh, Van Bel, Michiel, Li, Zhen, Van de Peer, Yves, Carretero-Paulet, Lorenzo, Maere, Steven

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The evolutionary significance of polyploidy von Van de Peer, Yves, Mizrachi, Eshchar, Marchal, Kathleen

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The Litsea genome and the evolution of the laurel family von Chen, Yi-Cun, Li, Zhen, Zhao, Yun-Xiao, Gao, Ming, Wang, Jie-Yu, Liu, Ke-Wei, Wang, Xue, Wu, Li-Wen, Jiao, Yu-Lian, Xu, Zi-Long, He, Wen-Guang, Zhang, Qi-Yan, Liang, Chieh-Kai, Hsiao, Yu-Yun, Zhang, Di-Yang, Lan, Si-Ren, Huang, Laiqiang, Xu, Wei, Tsai, Wen-Chieh, Liu, Zhong-Jian, Van de Peer, Yves, Wang, Yang-Dong

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Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package von Fabricio Almeida‐Silva, Van de Peer, Yves

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Gene cluster conservation provides insight into cercosporin biosynthesis and extends production to the genus Colletotrichum von de Jonge, Ronnie, Ebert, Malaika K., Huitt-Roehl, Callie R., Pal, Paramita, Suttle, Jeffrey C., Spanner, Rebecca E., Neubauer, Jonathan D., Jurick, Wayne M., Stott, Karina A., Secor, Gary A., Thomma, Bart P. H. J., Van de Peer, Yves, Townsend, Craig A., Bolton, Melvin D.

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Genomes of early-diverging streptophyte algae shed light on plant terrestrialization von Wang, Sibo, Li, Linzhou, Li, Haoyuan, Sahu, Sunil Kumar, Wang, Hongli, Xu, Yan, Xian, Wenfei, Song, Bo, Liang, Hongping, Cheng, Shifeng, Chang, Yue, Song, Yue, Çebi, Zehra, Wittek, Sebastian, Reder, Tanja, Peterson, Morten, Yang, Huanming, Wang, Jian, Melkonian, Barbara, Van de Peer, Yves, Xu, Xun, Wong, Gane Ka-Shu, Melkonian, Michael, Liu, Huan, Liu, Xin

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Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks von Vandepoele, Klaas, Quimbaya, Mauricio, Casneuf, Tine, De Veylder, Lieven, Van de Peer, Yves

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The Welwitschia genome reveals a unique biology underpinning extreme longevity in deserts von Wan, Tao, Liu, Zhiming, Leitch, Ilia J., Xin, Haiping, Maggs-Kölling, Gillian, Gong, Yanbing, Li, Zhen, Marais, Eugene, Liao, Yiying, Dai, Can, Liu, Fan, Wu, Qijia, Song, Chi, Zhou, Yadong, Huang, Weichang, Jiang, Kai, Wang, Qi, Yang, Yong, Zhong, Zhixiang, Yang, Ming, Yan, Xue, Hu, Guangwan, Hou, Chen, Su, Yingjuan, Feng, Shixiu, Yang, Ji, Yan, Jijun, Chu, Jinfang, Chen, Fan, Ran, Jinhua, Wang, Xiaoquan, Van de Peer, Yves, Leitch, Andrew R., Wang, Qingfeng

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The hornwort genome and early land plant evolution von Zhang, Jian, Fu, Xin-Xing, Li, Rui-Qi, Zhao, Xiang, Liu, Yang, Li, Ming-He, Zwaenepoel, Arthur, Ma, Hong, Goffinet, Bernard, Guan, Yan-Long, Xue, Jia-Yu, Liao, Yi-Ying, Wang, Qing-Feng, Wang, Qing-Hua, Wang, Jie-Yu, Zhang, Guo-Qiang, Wang, Zhi-Wen, Jia, Yu, Wang, Mei-Zhi, Dong, Shan-Shan, Yang, Jian-Fen, Jiao, Yuan-Nian, Guo, Ya-Long, Kong, Hong-Zhi, Lu, An-Ming, Yang, Huan-Ming, Zhang, Shou-Zhou, Van de Peer, Yves, Liu, Zhong-Jian, Chen, Zhi-Duan

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MicroRNA-mediated post-transcriptional regulation of Pinus pinaster response and resistance to pinewood nematode von Modesto, Inês, Inácio, Vera, Van de Peer, Yves, Miguel, Célia M.

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wgd-simple command line tools for the analysis of ancient whole-genome duplications von Zwaenepoel, Arthur, Van de Peer, Yves

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Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus von Novikova, Polina Yu, Brennan, Ian G., Booker, William, Mahony, Michael, Doughty, Paul, Lemmon, Alan R., Lemmon, Emily Moriarty, Roberts, J. Dale, Yant, Levi, Van de Peer, Yves, Keogh, J. Scott, Donnellan, Stephen C.

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Pseudo-chromosome–length genome assembly of a double haploid “Bartlett” pear (Pyrus communis L.) von Linsmith, Gareth, Rombauts, Stephane, Montanari, Sara, Deng, Cecilia H, Celton, Jean-Marc, Guérif, Philippe, Liu, Chang, Lohaus, Rolf, Zurn, Jason D, Cestaro, Alessandro, Bassil, Nahla V, Bakker, Linda V, Schijlen, Elio, Gardiner, Susan E, Lespinasse, Yves, Durel, Charles-Eric, Velasco, Riccardo, Neale, David B, Chagné, David, Van de Peer, Yves, Troggio, Michela, Bianco, Luca

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The Seagrass Methylome Is Associated With Variation in Photosynthetic Performance Among Clonal Shoots von Jueterbock, Alexander, Bostrom, Christoffer, Coyer, James A., Olsen, Jeanine L., Kopp, Martina, Dhanasiri, Anusha K. S., Smolina, Irina, Arnaud-Haond, Sophie, van de Peer, Yves, Hoarau, Galice

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