The quest for orthologs: finding the corresponding gene across genomes von Kuzniar, Arnold, van Ham, Roeland C.H.J, Pongor, Sándor, Leunissen, Jack A.M

Volltext

Genome-Wide Computational Function Prediction of Arabidopsis Proteins by Integration of Multiple Data Sources von Kourmpetis, Yiannis A.I, van Dijk, Aalt D.J, van Ham, Roeland C.H.J, ter Braak, Cajo J.F

Volltext

High-resolution chromosome mapping of BACs using multi-colour FISH and pooled-BAC FISH as a backbone for sequencing tomato chromosome 6 von Szinay, Dóra, Chang, Song-Bin, Khrustaleva, Ludmila, Peters, Sander, Schijlen, Elio, Bai, Yuling, Stiekema, Willem J, van Ham, Roeland C.H.J, de Jong, Hans, Klein Lankhorst, René M

Volltext

Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction von van Dijk, Aalt D J, Morabito, Giuseppa, Fiers, Martijn, van Ham, Roeland C H J, Angenent, Gerco C, Immink, Richard G H

Volltext

Assessing the contribution of alternative splicing to proteome diversity in Arabidopsis thaliana using proteomics data von Severing, Edouard I, Dijk, Aalt D.J. van, Ham, Roeland C.H.J. van

Volltext

Mutational and selective pressures on codon and amino acid usage in Buchnera, endosymbiotic bacteria of aphids von Rispe, Claude, Delmotte, François, van Ham, Roeland C H J, Moya, Andres

Volltext

Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function von Villegas-Morcillo, Amelia, Makrodimitris, Stavros, van Ham, Roeland C H J, Gomez, Angel M, Sanchez, Victoria, Reinders, Marcel J T

Volltext

Sequencing the potato genome: outline and first results to come from the elucidation of the sequence of the world's third most important food crop von Visser, R.G.F, Bachem, C.W.B, Boer, J.M. de, Bryan, G.J, Chakrabati, S.K, Feingold, S, Gromadka, R, Ham, R.C.H.J. van, Huang, S, Jacobs, J.M.E, Kuznetsov, Boris, Melo, P. de, Milbourne, D, Orjeda, G, Sagredo, Boris, Tang, X

Volltext

The genome of the stress-tolerant wild tomato species Solanum pennellii von Bolger, Anthony, Scossa, Federico, Bolger, Marie E, Lanz, Christa, Maumus, Florian, Tohge, Takayuki, Quesneville, Hadi, Alseekh, Saleh, Sørensen, Iben, Lichtenstein, Gabriel, Fich, Eric A, Conte, Mariana, Keller, Heike, Schneeberger, Korbinian, Schwacke, Rainer, Ofner, Itai, Vrebalov, Julia, Xu, Yimin, Osorio, Sonia, Aflitos, Saulo Alves, Schijlen, Elio, Jiménez-Goméz, José M, Ryngajllo, Malgorzata, Kimura, Seisuke, Kumar, Ravi, Koenig, Daniel, Headland, Lauren R, Maloof, Julin N, Sinha, Neelima, van Ham, Roeland C H J, Lankhorst, René Klein, Mao, Linyong, Vogel, Alexander, Arsova, Borjana, Panstruga, Ralph, Fei, Zhangjun, Rose, Jocelyn K C, Zamir, Dani, Carrari, Fernando, Giovannoni, James J, Weigel, Detlef, Usadel, Björn, Fernie, Alisdair R

Volltext

Metric learning on expression data for gene function prediction von Makrodimitris, Stavros, Reinders, Marcel J T, van Ham, Roeland C H J

Volltext

Improving protein function prediction using protein sequence and GO-term similarities von Makrodimitris, Stavros, van Ham, Roeland C H J, Reinders, Marcel J T

Volltext

SLIDER: A Generic Metaheuristic for the Discovery of Correlated Motifs in Protein-Protein Interaction Networks von Boyen, P., Van Dyck, D., Neven, F., van Ham, R. C. H. J., van Dijk, A. D. J.

Volltext

A Comparison of Global Sensitivity Analysis Methods for Explainable AI With an Application in Genomic Prediction von Stein, Bas Van, Raponi, Elena, Sadeghi, Zahra, Bouman, Niek, Van Ham, Roeland C. H. J., Back, Thomas

Volltext

Automatic Gene Function Prediction in the 2020's von Makrodimitris, Stavros, van Ham, Roeland C H J, Reinders, Marcel J T

Volltext

Reductive Genome Evolution in Buchnera aphidicola von Roeland C. H. J. van Ham, Kamerbeek, Judith, Palacios, Carmen, Rausell, Carolina, Abascal, Federico, Bastolla, Ugo, Fernández, Jose M., Jiménez, Luis, Postigo, Marina, Silva, Francisco J., Tamames, Javier, Viguera, Enrique, Latorre, Amparo, Valencia, Alfonso, Morán, Federico, Moya, Andrés

Volltext

Bayesian Markov Random Field analysis for protein function prediction based on network data von Kourmpetis, Yiannis A I, van Dijk, Aalt D J, Bink, Marco C A M, van Ham, Roeland C H J, ter Braak, Cajo J F

Volltext

Predicting the impact of alternative splicing on plant MADS domain protein function von Severing, Edouard I, van Dijk, Aalt D J, Morabito, Giuseppa, Busscher-Lange, Jacqueline, Immink, Richard G H, van Ham, Roeland C H J

Volltext

The Genome Sequence of Blochmannia floridanus: Comparative Analysis of Reduced Genomes von Gil, Rosario, Silva, Francisco J., Zientz, Evelyn, Delmotte, François, González-Candelas, Fernando, Latorre, Amparo, Rausell, Carolina, Kamerbeek, Judith, Gadau, Jürgen, Hölldobler, Bert, Roeland C. H. J. van Ham, Gross, Roy, Moya, Andrés

Volltext

Allermatch, a webtool for the prediction of potential allergenicity according to current FAO/WHO Codex alimentarius guidelines von Fiers, M.W.E.J, Kleter, G.A, Nijland, H, Peijnenburg, A.A.C.M, Nap, J.P.H, Ham, R.C.H.J. van

Volltext

Homologues of potato chromosome 5 show variable collinearity in the euchromatin, but dramatic absence of sequence similarity in the pericentromeric heterochromatin von de Boer, Jan M, Datema, Erwin, Tang, Xiaomin, Borm, Theo J A, Bakker, Erin H, van Eck, Herman J, van Ham, Roeland C H J, de Jong, Hans, Visser, Richard G F, Bachem, Christian W B

Volltext