Zooming into the binding groove of HLA molecules: which positions and which substitutions change peptide binding most? von van Deutekom, Hanneke W. M., Keşmir, Can

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FAIR Genomes metadata schema promoting Next Generation Sequencing data reuse in Dutch healthcare and research von van der Velde, K. Joeri, Singh, Gurnoor, Kaliyaperumal, Rajaram, Liao, XiaoFeng, de Ridder, Sander, Rebers, Susanne, Kerstens, Hindrik H. D., de Andrade, Fernanda, van Reeuwijk, Jeroen, De Gruyter, Fini E., Hiltemann, Saskia, Ligtvoet, Maarten, Weiss, Marjan M., van Deutekom, Hanneke W. M., Jansen, Anne M. L., Stubbs, Andrew P., Vissers, Lisenka E. L. M., Laros, Jeroen F. J., van Enckevort, Esther, Stemkens, Daphne, ‘t Hoen, Peter A. C., Beliën, Jeroen A. M., van Gijn, Mariëlle E., Swertz, Morris A.

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Cross-Omics: Integrating Genomics with Metabolomics in Clinical Diagnostics von Kerkhofs, Marten H. P. M., Haijes, Hanneke A., Willemsen, A. Marcel, van Gassen, Koen L. I., van der Ham, Maria, Gerrits, Johan, de Sain-van der Velden, Monique G. M., Prinsen, Hubertus C. M. T., van Deutekom, Hanneke W. M., van Hasselt, Peter M., Verhoeven-Duif, Nanda M., Jans, Judith J. M.

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Recommendations for IVDR compliant in-house software development in clinical practice: a how-to paper with three use cases von van Deutekom, Hanneke W.M., Haitjema, Saskia

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Natural genetic variation of the cardiac transcriptome in non-diseased donors and patients with dilated cardiomyopathy von Heinig, Matthias, Adriaens, Michiel E, Schafer, Sebastian, van Deutekom, Hanneke W M, Lodder, Elisabeth M, Ware, James S, Schneider, Valentin, Felkin, Leanne E, Creemers, Esther E, Meder, Benjamin, Katus, Hugo A, Rühle, Frank, Stoll, Monika, Cambien, François, Villard, Eric, Charron, Philippe, Varro, Andras, Bishopric, Nanette H, George, Jr, Alfred L, Dos Remedios, Cristobal, Moreno-Moral, Aida, Pesce, Francesco, Bauerfeind, Anja, Rüschendorf, Franz, Rintisch, Carola, Petretto, Enrico, Barton, Paul J, Cook, Stuart A, Pinto, Yigal M, Bezzina, Connie R, Hubner, Norbert

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Recombinant Interleukin‐1 Receptor Antagonist Is an Effective First‐Line Treatment Strategy in New‐Onset Systemic Juvenile Idiopathic Arthritis, Irrespective of HLA‐DRB1 Background... von Erkens, Remco G. A., Calis, Jorg J. A., Verwoerd, Anouk, De Roock, Sytze, Ter Haar, Nienke M., Den Engelsman, Gerda, Van der Veken, Lars T., Ernst, Robert F., Van Deutekom, Hanneke W. M., Pickering, Alex, Scholman, Rianne C., Jansen, Marc H. A., Swart, Joost F., Sinha, Rashmi, Roth, Johannes, Schulert, Grant S., Grom, Alexei A., Van Loosdregt, Jorg, Vastert, Sebastiaan J.

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Protein kinase B (c-akt) regulates hematopoietic lineage choice decisions during myelopoiesis von Buitenhuis, Miranda, Verhagen, Liesbeth P., van Deutekom, Hanneke W.M., Castor, Anders, Verploegen, Sandra, Koenderman, Leo, Jacobsen, Sten-Eirik W., Coffer, Paul J.

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HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev, and Nef expressing dendritic cells followed by treatment interruption von DE GOEDE, Anna L, VAN DEUTEKOM, Hanneke W. M, LEMEY, Philippe, GRUTERS, Rob A, VRANCKEN, Bram, SCHUTTEN, Martin, ALLARD, Sabine D, VAN BAALEN, Carel A, OSTERHAUS, Albert D. M. E, THIELEMANS, Kris, AERTS, Joeri L, KESMIR, Can

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The rate of immune escape vanishes when multiple immune responses control an HIV infection von van Deutekom, Hanneke W M, Wijnker, Gilles, de Boer, Rob J

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Differential regulation of granulopoiesis by the basic helix-loop-helix transcriptional inhibitors Id1 and Id2 von Buitenhuis, Miranda, van Deutekom, Hanneke W.M., Verhagen, Liesbeth P., Castor, Anders, Jacobsen, Sten Eirik W., Lammers, Jan-Willem J., Koenderman, Leo, Coffer, Paul J.

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Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations von Geneugelijk, Kirsten, Thus, Kirsten A, van Deutekom, Hanneke W M, Calis, Jorg J A, Borst, Eric, Keşmir, Can, Oudshoorn, Machteld, van der Holt, Bronno, Meijer, Ellen, Zeerleder, Sacha, de Groot, Marco R, von dem Borne, Peter A, Schaap, Nicolaas, Cornelissen, Jan, Kuball, Jürgen, Spierings, Eric

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A Consensus of Core Protein Complex Compositions for Saccharomyces cerevisiae von Benschop, Joris J., Brabers, Nathalie, van Leenen, Dik, Bakker, Linda V., van Deutekom, Hanneke W.M., van Berkum, Nynke L., Apweiler, Eva, Lijnzaad, Philip, Holstege, Frank C.P., Kemmeren, Patrick

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Characterization of the role of CaMKI-like kinase (CKLiK) in human granulocyte function von Verploegen, Sandra, Ulfman, Laurien, van Deutekom, Hanneke W.M., van Aalst, Corneli, Honing, Henk, Lammers, Jan-Willem J., Koenderman, Leo, Coffer, Paul J.

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A mutation in the glutamate-rich region of RNA-binding motif protein 20 causes dilated cardiomyopathy through missplicing of titin and impaired Frank-Starling mechanism von Beqqali, Abdelaziz, Bollen, Ilse A E, Rasmussen, Torsten B, van den Hoogenhof, Maarten M, van Deutekom, Hanneke W M, Schafer, Sebastian, Haas, Jan, Meder, Benjamin, Sørensen, Keld E, van Oort, Ralph J, Mogensen, Jens, Hubner, Norbert, Creemers, Esther E, van der Velden, Jolanda, Pinto, Yigal M

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Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic von SCHELLENS, Ingrid M. M, NAVIS, Marjon, BORGHANS, Jose A. M, VAN DEUTEKOM, Hanneke W. M, BOESER-NUNNINK, Brigitte, BERKHOUT, Ben, KOOTSTRA, Neeltje, MIEDEMA, Frank, KESMIR, Can, SCHUITEMAKER, Hanneke, VAN BAARLE, Debbie

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A comparative analysis of viral peptides presented by contemporary human and chimpanzee MHC class I molecules von van Deutekom, Hanneke W M, Hoof, Ilka, Bontrop, Ronald E, Keşmir, Can

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Dominant Processes during Human Dendritic Cell Maturation Revealed by Integration of Proteome and Transcriptome at the Pathway Level von Buschow, Sonja I, Lasonder, Edwin, van Deutekom, Hanneke W. M, Oud, Machteld M, Beltrame, Luca, Huynen, Martijn A, de Vries, I. Jolanda M, Figdor, Carl G, Cavalieri, Duccio

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Accuracy of NGS HLA typing data influenced by STR von van Deutekom, Hanneke W.M., Mulder, Wietse, Rozemuller, Erik H.

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Genome-Wide Polyadenylation Maps Reveal Dynamic mRNA 3′-End Formation in the Failing Human Heart von Creemers, Esther E, Bawazeer, Amira, Ugalde, Alejandro P, van Deutekom, Hanneke W.M, van der Made, Ingeborg, de Groot, Nina E, Adriaens, Michiel E, Cook, Stuart A, Bezzina, Connie R, Hubner, Norbert, van der Velden, Jolanda, Elkon, Ran, Agami, Reuven, Pinto, Yigal M

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The end of the laboratory developed test as we know it? Recommendations from a national multidisciplinary taskforce of laboratory specialists on the interpretation of the IVDR and... von Bank, Paul C.D., Jacobs, Leo H.J., van den Berg, Sjoerd A.A., van Deutekom, Hanneke W.M., Hamann, Dörte, Molenkamp, Richard, Ruivenkamp, Claudia A.L., Swen, Jesse J., Tops, Bastiaan B.J., Wamelink, Mirjam M.C., Wessels, Els, Oosterhuis, Wytze P.

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