Enrichment on steps, not genes, improves inference of differentially expressed pathways von Markarian, Nicholas, Van Auken, Kimberly M, Ebert, Dustin, Sternberg, Paul W

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WormBase 2016: expanding to enable helminth genomic research von Howe, Kevin L, Bolt, Bruce J, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Done, James, Down, Thomas, Gao, Sibyl, Grove, Christian, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, Lomax, Jane, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Stanley, Eleanor, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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WormBase 2014: new views of curated biology von Harris, Todd W, Baran, Joachim, Bieri, Tamberlyn, Cabunoc, Abigail, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Done, James, Grove, Christian, Howe, Kevin, Kishore, Ranjana, Lee, Raymond, Li, Yuling, Muller, Hans-Michael, Nakamura, Cecilia, Ozersky, Philip, Paulini, Michael, Raciti, Daniela, Schindelman, Gary, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Wong, J D, Yook, Karen, Schedl, Tim, Hodgkin, Jonathan, Berriman, Matthew, Kersey, Paul, Spieth, John, Stein, Lincoln, Sternberg, Paul W

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Using WormBase: A Genome Biology Resource for Caenorhabditis elegans and Related Nematodes von Grove, Christian, Cain, Scott, Chen, Wen J., Davis, Paul, Harris, Todd, Howe, Kevin L., Kishore, Ranjana, Lee, Raymond, Paulini, Michael, Raciti, Daniela, Tuli, Mary Ann, Van Auken, Kimberly, Williams, Gary

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Correction: Semantic representation of neural circuit knowledge in Caenorhabditis elegans von Prakash, Sharan J., Van Auken, Kimberly M., Hill, David P., Sternberg, Paul W.

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Semantic representation of neural circuit knowledge in Caenorhabditis elegans von Prakash, Sharan J., Van Auken, Kimberly M., Hill, David P., Sternberg, Paul W.

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WormBase 2017: molting into a new stage von Lee, Raymond Y N, Howe, Kevin L, Harris, Todd W, Arnaboldi, Valerio, Cain, Scott, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Gao, Sibyl, Grove, Christian, Kishore, Ranjana, Muller, Hans-Michael, Nakamura, Cecilia, Nuin, Paulo, Paulini, Michael, Raciti, Daniela, Rodgers, Faye, Russell, Matt, Schindelman, Gary, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Qinghua, Williams, Gary, Wright, Adam, Yook, Karen, Berriman, Matthew, Kersey, Paul, Schedl, Tim, Stein, Lincoln, Sternberg, Paul W

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Automatic categorization of diverse experimental information in the bioscience literature von Fang, Ruihua, Schindelman, Gary, Van Auken, Kimberly, Fernandes, Jolene, Chen, Wen, Wang, Xiaodong, Davis, Paul, Tuli, Mary Ann, Marygold, Steven J, Millburn, Gillian, Matthews, Beverley, Zhang, Haiyan, Brown, Nick, Gelbart, William M, Sternberg, Paul W

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Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation von Van Auken, Kimberly, Jaffery, Joshua, Chan, Juancarlos, Müller, Hans-Michael, Sternberg, Paul W

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Biochemical pathways represented by Gene Ontology-Causal Activity Models identify distinct phenotypes resulting from mutations in pathways von Hill, David P, Drabkin, Harold J, Smith, Cynthia L, Van Auken, Kimberly M, D’Eustachio, Peter

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Text mining meets community curation: a newly designed curation platform to improve author experience and participation at WormBase von Arnaboldi, Valerio, Raciti, Daniela, Van Auken, Kimberly, Chan, Juancarlos N, Müller, Hans-Michael, Sternberg, Paul W

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Guidelines for the functional annotation of microRNAs using the Gene Ontology von Huntley, Rachael P, Sitnikov, Dmitry, Orlic-Milacic, Marija, Balakrishnan, Rama, D'Eustachio, Peter, Gillespie, Marc E, Howe, Doug, Kalea, Anastasia Z, Maegdefessel, Lars, Osumi-Sutherland, David, Petri, Victoria, Smith, Jennifer R, Van Auken, Kimberly, Wood, Valerie, Zampetaki, Anna, Mayr, Manuel, Lovering, Ruth C

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Representing ontogeny through ontology: A developmental biologist's guide to the gene ontology von Hill, David P., Berardini, Tanya Z., Howe, Douglas G., Van Auken, Kimberly M.

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Annotation of gene product function from high-throughput studies using the Gene Ontology von Attrill, Helen, Gaudet, Pascale, Huntley, Rachael P, Lovering, Ruth C, Engel, Stacia R, Poux, Sylvain, Van Auken, Kimberly M, Georghiou, George, Chibucos, Marcus C, Berardini, Tanya Z, Wood, Valerie, Drabkin, Harold, Fey, Petra, Garmiri, Penelope, Harris, Midori A, Sawford, Tony, Reiser, Leonore, Tauber, Rebecca, Toro, Sabrina

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Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns von Wood, Valerie, Carbon, Seth, Harris, Midori A., Lock, Antonia, Engel, Stacia R., Hill, David P., Van Auken, Kimberly, Attrill, Helen, Feuermann, Marc, Gaudet, Pascale, Lovering, Ruth C., Poux, Sylvain, Rutherford, Kim M., Mungall, Christopher J.

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WormBase 2007 von Rogers, Anthony, Antoshechkin, Igor, Bieri, Tamberlyn, Blasiar, Darin, Bastiani, Carol, Canaran, Payan, Chan, Juancarlos, Chen, Wen J, Davis, Paul, Fernandes, Jolene, Fiedler, Tristan J, Han, Michael, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, McKay, Sheldon, Müller, Hans-Michael, Nakamura, Cecilia, Ozersky, Philip, Petcherski, Andrei, Schindelman, Gary, Schwarz, Erich M, Spooner, Will, Tuli, Mary Ann, Van Auken, Kimberly, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Yook, Karen, Durbin, Richard, Stein, Lincoln D, Spieth, John, Sternberg, Paul W

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Muscle Logic: New Knowledge Resource for Anatomy Enables Comprehensive Searches of the Literature on the Feeding Muscles of Mammals von Druzinsky, Robert E, Balhoff, James P, Crompton, Alfred W, Done, James, German, Rebecca Z, Haendel, Melissa A, Herrel, Anthony, Herring, Susan W, Lapp, Hilmar, Mabee, Paula M, Muller, Hans-Michael, Mungall, Christopher J, Sternberg, Paul W, Van Auken, Kimberly, Vinyard, Christopher J, Williams, Susan H, Wall, Christine E

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WormBase: new content and better access von Bieri, Tamberlyn, Blasiar, Darin, Ozersky, Philip, Antoshechkin, Igor, Bastiani, Carol, Canaran, Payan, Chan, Juancarlos, Chen, Nansheng, Chen, Wen J, Davis, Paul, Fiedler, Tristan J, Girard, Lisa, Han, Michael, Harris, Todd W, Kishore, Ranjana, Lee, Raymond, McKay, Sheldon, Müller, Hans-Michael, Nakamura, Cecilia, Petcherski, Andrei, Rangarajan, Arun, Rogers, Anthony, Schindelman, Gary, Schwarz, Erich M, Spooner, Will, Tuli, Mary Ann, Auken, Kimberly Van, Wang, Daniel, Wang, Xiaodong, Williams, Gary, Durbin, Richard, Stein, Lincoln D, Sternberg, Paul W, Spieth, John

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The BioGRID Interaction Database: 2011 update von Stark, Chris, Breitkreutz, Bobby-Joe, Chatr-Aryamontri, Andrew, Boucher, Lorrie, Oughtred, Rose, Livstone, Michael S, Nixon, Julie, Van Auken, Kimberly, Wang, Xiaodong, Shi, Xiaoqi, Reguly, Teresa, Rust, Jennifer M, Winter, Andrew, Dolinski, Kara, Tyers, Mike

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Roles of the Homothorax/Meis/Prep homolog UNC-62 and the Exd/Pbx homologs CEH-20 and CEH-40 in C. elegans embryogenesis von Van Auken, Kimberly, Weaver, Daniel, Robertson, Barbara, Sundaram, Meera, Saldi, Tassa, Edgar, Lois, Elling, Ulrich, Lee, Monica, Boese, Queta, Wood, William B

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