Molecular Surface Recognition: Determination of Geometric Fit Between Proteins and Their Ligands by Correlation Techniques von Katchalski-Katzir, Ephraim, Shariv, Isaac, Eisenstein, Miriam, Friesem, Asher A., Aflalo, Claude, Vakser, Ilya A.

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How common is the funnel‐like energy landscape in protein‐protein interactions? von Tovchigrechko, Andrei, Vakser, Ilya A.

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Protein docking for low-resolution structures von Vakser, I A

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GRAMM-X public web server for protein-protein docking von Tovchigrechko, Andrey, Vakser, Ilya A

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From nonspecific DNA-protein encounter complexes to the prediction of DNA-protein interactions von Gao, Mu, Skolnick, Jeffrey

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Construction of a 3D model of cytochrome P450 2B4 von Chang, Y T, Stiffelman, O B, Vakser, I A, Loew, G H, Bridges, A, Waskell, L

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A Systematic Study of Low-Resolution Recognition in Protein-Protein Complexes von Vakser, Ilya A., Matar, Omar G., Lam, Chan F.

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Evaluation of GRAMM low-resolution docking methodology on the hemagglutinin-antibody complex von Vakser, Ilya A.

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Hydrophobic docking: A proposed enhancement to molecular recognition techniques von Vakser, Ilya A., Aflalo, Claude

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Long-distance potentials: an approach to the multiple-minima problem in ligand-receptor interaction von Vakser, I A

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Residue frequencies and pairing preferences at protein-protein interfaces von Glaser, Fabian, Steinberg, David M., Vakser, Ilya A., Ben-Tal, Nir

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Development and testing of an automated approach to protein docking von Tovchigrechko, Andrei, Vakser, Ilya A.

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Strategies for modeling the interactions of transmembrane helices of G protein-coupled receptors by geometric complementarity using the GRAMM computer algorithm von Vakser, Ilya A., Jiang, Sulin

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Side chains in transmembrane helices are shorter at helix-helix interfaces von Jiang, Sulin, Vakser, Ilya A.

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Application of docking methodologies to modeled proteins von Singh, A, Dauzhenka, T, Kundrotas, PJ, Sternberg, MJE, Vakser, IA

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Main-chain complementarity in protein-protein recognition von Vakser, I A

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Identification of the binding site on cytochrome P450 2B4 for cytochrome b5 and cytochrome P450 reductase von Bridges, A, Gruenke, L, Chang, Y T, Vakser, I A, Loew, G, Waskell, L

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Low-resolution docking: Prediction of complexes for underdetermined structures von Vakser, Ilya A.

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Multivalued μ-Acoustoconductivity of Semiconductors von Bugaev, A. S., Vakser, A. I.

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Docking of protein models von Tovchigrechko, Andrei, Wells, Christopher A., Vakser, Ilya A.

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