ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap von Metsalu, Tauno, Vilo, Jaak

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g:Profiler: a web server for functional enrichment analysis and conversions of gene lists (2019 update) von Raudvere, Uku, Kolberg, Liis, Kuzmin, Ivan, Arak, Tambet, Adler, Priit, Peterson, Hedi, Vilo, Jaak

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Robust rank aggregation for gene list integration and meta-analysis von Kolde, Raivo, Laur, Sven, Adler, Priit, Vilo, Jaak

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gprofiler2 -- an R package for gene list functional enrichment analysis and namespace conversion toolset g:Profiler [version 2; peer review: 2 approved] von Kolberg, Liis, Raudvere, Uku, Kuzmin, Ivan, Vilo, Jaak, Peterson, Hedi

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Meta‐analysis of microRNA expression in lung cancer von Võsa, Urmo, Vooder, Tõnu, Kolde, Raivo, Vilo, Jaak, Metspalu, Andres, Annilo, Tarmo

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A new way to protect privacy in large-scale genome-wide association studies von Kamm, Liina, Bogdanov, Dan, Laur, Sven, Vilo, Jaak

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Comparing distributions of polygenic risk scores of type 2 diabetes and coronary heart disease within different populations von Reisberg, Sulev, Iljasenko, Tatjana, Läll, Kristi, Fischer, Krista, Vilo, Jaak

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GOsummaries: an R Package for Visual Functional Annotation of Experimental Data [version 1; peer review: 2 approved] von Kolde, Raivo, Vilo, Jaak

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PAWER: protein array web exploreR von Fishman, Dmytro, Kuzmin, Ivan, Adler, Priit, Vilo, Jaak, Peterson, Hedi

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Validating Fitbit Zip for monitoring physical activity of children in school: a cross-sectional study von Mooses, Kerli, Oja, Marek, Reisberg, Sulev, Vilo, Jaak, Kull, Merike

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g:Profiler—a web server for functional interpretation of gene lists (2011 update) von Reimand, Jüri, Arak, Tambet, Vilo, Jaak

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seqlm: an MDL based method for identifying differentially methylated regions in high density methylation array data von Kolde, Raivo, Märtens, Kaspar, Lokk, Kaie, Laur, Sven, Vilo, Jaak

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Gene expression data analysis von Brazma, Alvis, Vilo, Jaak

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funcExplorer: a tool for fast data-driven functional characterisation of high-throughput expression data von Kolberg, Liis, Kuzmin, Ivan, Adler, Priit, Vilo, Jaak, Peterson, Hedi

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Mining for coexpression across hundreds of datasets using novel rank aggregation and visualization methods von Adler, Priit, Kolde, Raivo, Kull, Meelis, Tkachenko, Aleksandr, Peterson, Hedi, Reimand, Jüri, Vilo, Jaak

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DNA methylome profiling of human tissues identifies global and tissue-specific methylation patterns von Lokk, Kaie, Modhukur, Vijayachitra, Rajashekar, Balaji, Märtens, Kaspar, Mägi, Reedik, Kolde, Raivo, Koltšina, Marina, Nilsson, Torbjörn K, Vilo, Jaak, Salumets, Andres, Tõnisson, Neeme

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A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells von Jung, Marc, Peterson, Hedi, Chavez, Lukas, Kahlem, Pascal, Lehrach, Hans, Vilo, Jaak, Adjaye, James

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TRIB3 enhances cell viability during glucose deprivation in HEK293-derived cells by upregulating IGFBP2, a novel nutrient deficiency survival factor von Örd, Tiit, Örd, Daima, Adler, Priit, Vilo, Jaak, Örd, Tõnis

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Comprehensive reanalysis of transcription factor knockout expression data in Saccharomyces cerevisiae reveals many new targets von Reimand, Jüri, Vaquerizas, Juan M, Todd, Annabel E, Vilo, Jaak, Luscombe, Nicholas M

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DNA methylation changes in endometrium and correlation with gene expression during the transition from pre-receptive to receptive phase von Kukushkina, Viktorija, Modhukur, Vijayachitra, Suhorutšenko, Marina, Peters, Maire, Mägi, Reedik, Rahmioglu, Nilufer, Velthut-Meikas, Agne, Altmäe, Signe, Esteban, Francisco J., Vilo, Jaak, Zondervan, Krina, Salumets, Andres, Laisk-Podar, Triin

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