Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping von Gidoni, Moriah, Snir, Omri, Peres, Ayelet, Polak, Pazit, Lindeman, Ida, Mikocziova, Ivana, Sarna, Vikas Kumar, Lundin, Knut E. A., Clouser, Christopher, Vigneault, Francois, Collins, Andrew M., Sollid, Ludvig M., Yaari, Gur

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Hierarchical Clustering Can Identify B Cell Clones with High Confidence in Ig Repertoire Sequencing Data von Gupta, Namita T, Adams, Kristofor D, Briggs, Adrian W, Timberlake, Sonia C, Vigneault, Francois, Kleinstein, Steven H

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pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires von Vander Heiden, Jason A, Yaari, Gur, Uduman, Mohamed, Stern, Joel N H, O'Connor, Kevin C, Hafler, David A, Vigneault, Francois, Kleinstein, Steven H

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Dysregulation of B Cell Repertoire Formation in Myasthenia Gravis Patients Revealed through Deep Sequencing von Vander Heiden, Jason A, Stathopoulos, Panos, Zhou, Julian Q, Chen, Luan, Gilbert, Tamara J, Bolen, Christopher R, Barohn, Richard J, Dimachkie, Mazen M, Ciafaloni, Emma, Broering, Teresa J, Vigneault, Francois, Nowak, Richard J, Kleinstein, Steven H, O'Connor, Kevin C

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Systematic identification of edited microRNAs in the human brain von Alon, Shahar, Mor, Eyal, Vigneault, Francois, Church, George M, Locatelli, Franco, Galeano, Federica, Gallo, Angela, Shomron, Noam, Eisenberg, Eli

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Single T Cell Sequencing Demonstrates the Functional Role of αβ TCR Pairing in Cell Lineage and Antigen Specificity von Carter, Jason A, Preall, Jonathan B, Grigaityte, Kristina, Goldfless, Stephen J, Jeffery, Eric, Briggs, Adrian W, Vigneault, Francois, Atwal, Gurinder S

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High-resolution antibody dynamics of vaccine-induced immune responses von Laserson, Uri, Vigneault, Francois, Gadala-Maria, Daniel, Yaari, Gur, Uduman, Mohamed, Heiden, Jason A. Vander, Kelton, William, Jung, Sang Taek, Liu, Yi, Laserson, Jonathan, Chari, Raj, Lee, Je-Hyuk, Bachelet, Ido, Hickey, Brendan, Lieberman-Aiden, Erez, Hanczaruk, Bozena, Simen, Birgitte B., Egholm, Michael, Koller, Daphne, Georgiou, George, Kleinstein, Steven H., Church, George M.

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Models of somatic hypermutation targeting and substitution based on synonymous mutations from high-throughput immunoglobulin sequencing data von Yaari, Gur, Vander Heiden, Jason A, Uduman, Mohamed, Gadala-Maria, Daniel, Gupta, Namita, Stern, Joel N H, O'Connor, Kevin C, Hafler, David A, Laserson, Uri, Vigneault, Francois, Kleinstein, Steven H

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Breast cancer is marked by specific, Public T-cell receptor CDR3 regions shared by mice and humans von Gordin, Miri, Philip, Hagit, Zilberberg, Alona, Gidoni, Moriah, Margalit, Raanan, Clouser, Christopher, Adams, Kristofor, Vigneault, Francois, Cohen, Irun R., Yaari, Gur, Efroni, Sol

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Barcoding bias in high-throughput multiplex sequencing of miRNA von Alon, Shahar, Vigneault, Francois, Eminaga, Seda, Christodoulou, Danos C, Seidman, Jonathan G, Church, George M, Eisenberg, Eli

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Antibody Repertoire Analysis of Hepatitis C Virus Infections Identifies Immune Signatures Associated With Spontaneous Clearance von Eliyahu, Sivan, Sharabi, Oz, Elmedvi, Shiri, Timor, Reut, Davidovich, Ateret, Vigneault, Francois, Clouser, Chris, Hope, Ronen, Nimer, Assy, Braun, Marius, Weiss, Yaacov Y, Polak, Pazit, Yaari, Gur, Gal-Tanamy, Meital

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Exploration of immunoglobulin transcriptomes from mice immunized with three-finger toxins and phospholipases A2 from the Central American coral snake, Micrurus nigrocinctus von Laustsen, Andreas H, Engmark, Mikael, Clouser, Christopher, Timberlake, Sonia, Vigneault, Francois, Gutiérrez, José María, Lomonte, Bruno

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Neutralizing antibodies against West Nile virus identified directly from human B cells by single-cell analysis and next generation sequencing von Tsioris, Konstantinos, Gupta, Namita T, Ogunniyi, Adebola O, Zimnisky, Ross M, Qian, Feng, Yao, Yi, Wang, Xiaomei, Stern, Joel N H, Chari, Raj, Briggs, Adrian W, Clouser, Christopher R, Vigneault, Francois, Church, George M, Garcia, Melissa N, Murray, Kristy O, Montgomery, Ruth R, Kleinstein, Steven H, Love, J Christopher

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Transcriptional Profiling of CD4 T Cells Identifies Distinct Subgroups of HIV-1 Elite Controllers von VIGNEAULT, Francois, WOODS, Matthew, TELENTI, Amalio, YU, Xu G, LICHTERFELD, Mathias, BUZON, Maria J, CHUN LI, PEREYRA, Florencia, CROSBY, Seth D, RYCHERT, Jennifer, CHURCH, George, MARTINEZ-PICADO, Javier, ROSENBERG, Eric S

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Efficient microRNA capture and bar-coding via enzymatic oligonucleotide adenylation von Vigneault, Francois, Church, George M, Sismour, A Michael

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Laminin reduces expression of the human α6 integrin subunit gene by altering the level of the transcription factors Sp1 and Sp3 von GAUDREAULT, Manon, VIGNEAULT, Francois, LECLERC, Steeve, GUERIN, Sylvain L

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Correction: The Effects of Somatic Hypermutation on Neutralization and Binding in the PGT121 Family of Broadly Neutralizing HIV Antibodies von Sok, Devin, Laserson, Uri, Laserson, Jonathan, Liu, Yi, Vigneault, Francois, Julien, Jean-Philippe, Briney, Bryan, Ramos, Alejandra, Saye, Karen F., Le, Khoa, Mahan, Alison, Wang, Shenshen, Kardar, Mehran, Yaari, Gur, Walker, Laura M., Simen, Birgitte B., St. John, Elizabeth P., Chan-Hui, Po-Ying, Swiderek, Kristine, Kleinstein, Stephen H., Alter, Galit, Seaman, Michael S., Chakraborty, Arup K., Koller, Daphne, Wilson, Ian A., Church, George M., Burton, Dennis R., Poignard, Pascal

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Liver Is a Generative Site for the B Cell Response to Ehrlichia muris von Trivedi, Nikita, Weisel, Florian, Smita, Shuchi, Joachim, Stephen, Kader, Muhamuda, Radhakrishnan, Aditya, Clouser, Chris, Rosenfeld, Aaron M., Chikina, Maria, Vigneault, Francois, Hershberg, Uri, Ismail, Nahed, Shlomchik, Mark Jay

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Massively parallel sequencing of single cells by epicPCR links functional genes with phylogenetic markers von Spencer, Sarah J, Tamminen, Manu V, Preheim, Sarah P, Guo, Mira T, Briggs, Adrian W, Brito, Ilana L, A Weitz, David, Pitkänen, Leena K, Vigneault, Francois, Virta, Marko PJuhani, Alm, Eric J

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Salmonella Infection Drives Promiscuous B Cell Activation Followed by Extrafollicular Affinity Maturation von Di Niro, Roberto, Lee, Seung-Joo, Vander Heiden, Jason A., Elsner, Rebecca A., Trivedi, Nikita, Bannock, Jason M., Gupta, Namita T., Kleinstein, Steven H., Vigneault, Francois, Gilbert, Tamara J., Meffre, Eric, McSorley, Stephen J., Shlomchik, Mark J.

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