Aberrant sperm DNA methylation predicts male fertility status and embryo quality von Aston, Kenneth I., Ph.D, Uren, Philip J., Ph.D, Jenkins, Timothy G., Ph.D, Horsager, Alan, Ph.D, Cairns, Bradley R., Ph.D, Smith, Andrew D., Ph.D, Carrell, Douglas T., Ph.D

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Riborex: fast and flexible identification of differential translation from Ribo-seq data von Li, Wenzheng, Wang, Weili, Uren, Philip J, Penalva, Luiz O F, Smith, Andrew D

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Site identification in high-throughput RNA―protein interaction data von UREN, Philip J, BAHRAMI-SAMANI, Emad, BURNS, Suzanne C, MEI QIAO, KARGINOV, Fedor V, HODGES, Emily, HANNON, Gregory J, SANFORD, Jeremy R, PENALVA, Luiz O. F, SMITH, Andrew D

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Directional DNA Methylation Changes and Complex Intermediate States Accompany Lineage Specificity in the Adult Hematopoietic Compartment von Hodges, Emily, Molaro, Antoine, Dos Santos, Camila O., Thekkat, Pramod, Song, Qiang, Uren, Philip J., Park, Jin, Butler, Jason, Rafii, Shahin, McCombie, W. Richard, Smith, Andrew D., Hannon, Gregory J.

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IGF2BP3 Modulates the Interaction of Invasion-Associated Transcripts with RISC von Ennajdaoui, Hanane, Howard, Jonathan M., Sterne-Weiler, Timothy, Jahanbani, Fereshteh, Coyne, Doyle J., Uren, Philip J., Dargyte, Marija, Katzman, Sol, Draper, Jolene M., Wallace, Andrew, Cazarez, Oscar, Burns, Suzanne C., Qiao, Mei, Hinck, Lindsay, Smith, Andrew D., Toloue, Masoud M., Blencowe, Benjamin J., Penalva, Luiz O.F., Sanford, Jeremy R.

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Molecular hierarchy of mammary differentiation yields refined markers of mammary stem cells von dos Santos, Camila O., Rebbeck, Clare, Rozhkova, Elena, Valentine, Amy, Samuels, Abigail, Kadiri, Lolahon R., Osten, Pavel, Harris, Elena Y., Uren, Philip J., Smith, Andrew D., Hannon, Gregory J.

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Musashi1 Impacts Radio-Resistance in Glioblastoma by Controlling DNA-Protein Kinase Catalytic Subunit von de Araujo, Patricia Rosa, Gorthi, Aparna, da Silva, Acarizia E., Tonapi, Sonal S., Vo, Dat T., Burns, Suzanne C., Qiao, Mei, Uren, Philip J., Yuan, Zhi-Min, Bishop, Alexander J.R., Penalva, Luiz O.F.

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Genomic analyses reveal broad impact of miR-137 on genes associated with malignant transformation and neuronal differentiation in glioblastoma cells von Tamim, Saleh, Vo, Dat T, Uren, Philip J, Qiao, Mei, Bindewald, Eckart, Kasprzak, Wojciech K, Shapiro, Bruce A, Nakaya, Helder I, Burns, Suzanne C, Araujo, Patricia R, Nakano, Ichiro, Radek, Agnes J, Kuersten, Scott, Smith, Andrew D, Penalva, Luiz O F

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The RNA-Binding Protein Musashi1 Affects Medulloblastoma Growth via a Network of Cancer-Related Genes and Is an Indicator of Poor Prognosis von Vo, Dat T, Subramaniam, Dharmalingam, Remke, Marc, Burton, Tarea L, Uren, Philip J, Gelfond, Jonathan A, de Sousa Abreu, Raquel, Burns, Suzanne C, Qiao, Mei, Suresh, Uthra, Korshunov, Andrey, Dubuc, Adrian M, Northcott, Paul A, Smith, Andrew D, Pfister, Stefan M, Taylor, Michael D, Janga, Sarath C, Anant, Shrikant, Vogel, Christine, Penalva, Luiz O.F

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Leveraging cross-link modification events in CLIP-seq for motif discovery von Bahrami-Samani, Emad, Penalva, Luiz O F, Smith, Andrew D, Uren, Philip J

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High-throughput analyses of hnRNP H1 dissects its multi-functional aspect von Uren, Philip J., Bahrami-Samani, Emad, de Araujo, Patricia Rosa, Vogel, Christine, Qiao, Mei, Burns, Suzanne C., Smith, Andrew D., Penalva, Luiz O. F.

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Genomic Analyses of the RNA-binding Protein Hu Antigen R (HuR) Identify a Complex Network of Target Genes and Novel Characteristics of Its Binding Sites von Uren, Philip J., Burns, Suzanne C., Ruan, Jianhua, Singh, Kusum K., Smith, Andrew D., Penalva, Luiz O.F.

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RNA-Binding Protein Musashi1 Is a Central Regulator of Adhesion Pathways in Glioblastoma von Uren, Philip J., Vo, Dat T., de Araujo, Patricia Rosa, Pötschke, Rebecca, Burns, Suzanne C., Bahrami-Samani, Emad, Qiao, Mei, de Sousa Abreu, Raquel, Nakaya, Helder I., Correa, Bruna R., Kühnöl, Caspar, Ule, Jernej, Martindale, Jennifer L., Abdelmohsen, Kotb, Gorospe, Myriam, Smith, Andrew D., Penalva, Luiz O. F.

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Large-scale heterogeneous disruption of sperm dna-methylation in infertile individuals is associated with genes implicated in sperm chemotaxis, acrosome reaction and egg-binding von Uren, Philip J, Williamson, La-Toya, Karsian, Mike, Carrell, Douglas, Smith, Andrew D, Horsager, Alan

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A profile of transcriptomic changes in the rd10 mouse model of retinitis pigmentosa von Uren, Philip J, Lee, Justine T, Doroudchi, M Mehdi, Smith, Andrew D, Horsager, Alan

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Establishing a stable, repeatable platform for measuring changes in sperm DNA methylation von Abbasi, Mohammad, Smith, Andrew D, Swaminathan, Harish, Sangngern, Peer, Douglas, Amanda, Horsager, Alan, Carrell, Douglas T, Uren, Philip J

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Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput von Bahrami-Samani, Emad, Vo, Dat T., de Araujo, Patricia Rosa, Vogel, Christine, Smith, Andrew D., Penalva, Luiz O. F., Uren, Philip J.

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RNA binding protein HuR regulates the expression of ABCA1[S] von Ramírez, Cristina M., Lin, Chin Sheng, Abdelmohsen, Kotb, Goedeke, Leigh, Yoon, Je-Hyun, Madrigal-Matute, Julio, Martin-Ventura, Jose L., Vo, Dat T., Uren, Philip J., Penalva, Luiz O., Gorospe, Myriam, Fernández-Hernando, Carlos

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Topolink™: Advancing Cancer Genomics with a High-Resolution, High-Throughput Approach for Low Sequencing and Highly Sensitive Detection of Structural Variants von Uren, Philip, Torchia, Jonathon, Hwang, Daniel, Wadolkowski, Mark, Fredriksson, Natalie, Blanchette, Marco, Munding, Lisa

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Prevalence of genetic disease carriers among patients seeking fertility treatment von Luque, Jennifer C., Terhaar, Catherine, Bahrami-Samani, Emad, Uren, Philip James, Johnson, Ramsey, McDaniel, Lisa D.

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