Alternative Splicing Regulatory Networks: Functions, Mechanisms, and Evolution von Ule, Jernej, Blencowe, Benjamin J.

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Open access, open data and peer review von Ule, Jernej

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RNA modifications detection by comparative Nanopore direct RNA sequencing von Leger, Adrien, Amaral, Paulo P., Pandolfini, Luca, Capitanchik, Charlotte, Capraro, Federica, Miano, Valentina, Migliori, Valentina, Toolan-Kerr, Patrick, Sideri, Theodora, Enright, Anton J., Tzelepis, Konstantinos, van Werven, Folkert J., Luscombe, Nicholas M., Barbieri, Isaia, Ule, Jernej, Fitzgerald, Tomas, Birney, Ewan, Leonardi, Tommaso, Kouzarides, Tony

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Understanding splicing regulation through RNA splicing maps von Witten, Joshua T, Ule, Jernej

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Protein–RNA interactions: new genomic technologies and perspectives von König, Julian, Zarnack, Kathi, Luscombe, Nicholas M., Ule, Jernej

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Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS von Luisier, Raphaelle, Tyzack, Giulia E., Hall, Claire E., Mitchell, Jamie S., Devine, Helen, Taha, Doaa M., Malik, Bilal, Meyer, Ione, Greensmith, Linda, Newcombe, Jia, Ule, Jernej, Luscombe, Nicholas M., Patani, Rickie

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Genomic Accumulation of Retrotransposons Was Facilitated by Repressive RNA‐Binding Proteins: A Hypothesis von Attig, Jan, Ule, Jernej

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hiCLIP reveals the in vivo atlas of mRNA secondary structures recognized by Staufen 1 von Sugimoto, Yoichiro, Vigilante, Alessandra, Darbo, Elodie, Zirra, Alexandra, Militti, Cristina, D’Ambrogio, Andrea, Luscombe, Nicholas M., Ule, Jernej

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Intergenic RNA mainly derives from nascent transcripts of known genes von Agostini, Federico, Zagalak, Julian, Attig, Jan, Ule, Jernej, Luscombe, Nicholas M.

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Major Shifts in Glial Regional Identity Are a Transcriptional Hallmark of Human Brain Aging von Soreq, Lilach, Rose, Jamie, Soreq, Eyal, Hardy, John, Trabzuni, Daniah, Cookson, Mark R., Smith, Colin, Ryten, Mina, Patani, Rickie, Ule, Jernej

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Ribonucleoprotein complexes in neurologic diseases von Ule, Jernej

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CDK11 is required for transcription of replication-dependent histone genes von Gajdušková, Pavla, Ruiz de los Mozos, Igor, Rájecký, Michal, Hluchý, Milan, Ule, Jernej, Blazek, Dalibor

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TDP-43 condensation properties specify its RNA-binding and regulatory repertoire von Hallegger, Martina, Chakrabarti, Anob M., Lee, Flora C.Y., Lee, Bo Lim, Amalietti, Aram G., Odeh, Hana M., Copley, Katie E., Rubien, Jack D., Portz, Bede, Kuret, Klara, Huppertz, Ina, Rau, Frédérique, Patani, Rickie, Fawzi, Nicolas L., Shorter, James, Luscombe, Nicholas M., Ule, Jernej

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psiCLIP reveals dynamic RNA binding by DEAH-box helicases before and after exon ligation von Strittmatter, Lisa M., Capitanchik, Charlotte, Newman, Andrew J., Hallegger, Martina, Norman, Christine M., Fica, Sebastian M., Oubridge, Chris, Luscombe, Nicholas M., Ule, Jernej, Nagai, Kiyoshi

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Widespread FUS mislocalization is a molecular hallmark of amyotrophic lateral sclerosis von Tyzack, Giulia E, Luisier, Raphaelle, Taha, Doaa M, Neeves, Jacob, Modic, Miha, Mitchell, Jamie S, Meyer, Ione, Greensmith, Linda, Newcombe, Jia, Ule, Jernej, Luscombe, Nicholas M, Patani, Rickie

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Orthogonal matrix factorization enables integrative analysis of multiple RNA binding proteins von Stražar, Martin, Žitnik, Marinka, Zupan, Blaž, Ule, Jernej, Curk, Tomaž

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Positional motif analysis reveals the extent of specificity of protein-RNA interactions observed by CLIP von Kuret, Klara, Amalietti, Aram Gustav, Jones, D Marc, Capitanchik, Charlotte, Ule, Jernej

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Molecular basis of UG-rich RNA recognition by the human splicing factor TDP-43 von Lukavsky, Peter J, Daujotyte, Dalia, Tollervey, James R, Ule, Jernej, Stuani, Cristiana, Buratti, Emanuele, Baralle, Francisco E, Damberger, Fred F, Allain, Frédéric H-T

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Direct Competition between hnRNP C and U2AF65 Protects the Transcriptome from the Exonization of Alu Elements von Zarnack, Kathi, König, Julian, Tajnik, Mojca, Martincorena, Iñigo, Eustermann, Sebastian, Stévant, Isabelle, Reyes, Alejandro, Anders, Simon, Luscombe, Nicholas M., Ule, Jernej

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iCLIP reveals the function of hnRNP particles in splicing at individual nucleotide resolution von König, Julian, Zupan, Bla, Zarnack, Kathi, Kayikci, Melis, Curk, Toma, Luscombe, Nicholas M, Turner, Daniel J, Rot, Gregor, Ule, Jernej

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