Sorghum bicolor genome and the diversification of grasses von Paterson, Andrew H, Bowers, John E, Bruggmann, Remy, Dubchak, Inna, Grimwood, Jane, Gundlach, Heidrun, Haberer, Georg, Hellsten, Uffe, Mitros, Therese, Poliakov, Alexander, Schmutz, Jeremy, Spannagl, Manuel, Tang, Haibao, Wang, Xiyin, Wicker, Thomas, Ware, Doreen

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Phytozome: a comparative platform for green plant genomics von Goodstein, David M., Shu, Shengqiang, Howson, Russell, Neupane, Rochak, Hayes, Richard D., Fazo, Joni, Mitros, Therese, Dirks, William, Hellsten, Uffe, Putnam, Nicholas , Rokhsar, Daniel S.

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Examining the cause of high inbreeding depression: analysis of whole‐genome sequence data in 28 selfed progeny of Eucalyptus grandis von Hedrick, Philip W, Hellsten, Uffe, Grattapaglia, Dario

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The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history von Filiault, Danièle L, Ballerini, Evangeline S, Mandáková, Terezie, Aköz, Gökçe, Derieg, Nathan J, Schmutz, Jeremy, Jenkins, Jerry, Grimwood, Jane, Shu, Shengqiang, Hayes, Richard D, Hellsten, Uffe, Barry, Kerrie, Yan, Juying, Mihaltcheva, Sirma, Karafiátová, Miroslava, Nizhynska, Viktoria, Kramer, Elena M, Lysak, Martin A, Hodges, Scott A, Nordborg, Magnus

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Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication von Wu, G Albert, Prochnik, Simon, Jenkins, Jerry, Salse, Jerome, Hellsten, Uffe, Murat, Florent, Perrier, Xavier, Ruiz, Manuel, Scalabrin, Simone, Terol, Javier, Takita, Marco Aurélio, Labadie, Karine, Poulain, Julie, Couloux, Arnaud, Jabbari, Kamel, Cattonaro, Federica, Del Fabbro, Cristian, Pinosio, Sara, Zuccolo, Andrea, Chapman, Jarrod, Grimwood, Jane, Tadeo, Francisco R, Estornell, Leandro H, Muñoz-Sanz, Juan V, Ibanez, Victoria, Herrero-Ortega, Amparo, Aleza, Pablo, Pérez-Pérez, Julián, Ramón, Daniel, Brunel, Dominique, Luro, François, Chen, Chunxian, Farmerie, William G, Desany, Brian, Kodira, Chinnappa, Mohiuddin, Mohammed, Harkins, Tim, Fredrikson, Karin, Burns, Paul, Lomsadze, Alexandre, Borodovsky, Mark, Reforgiato, Giuseppe, Freitas-Astúa, Juliana, Quetier, Francis, Navarro, Luis, Roose, Mikeal, Wincker, Patrick, Schmutz, Jeremy, Morgante, Michele, Machado, Marcos Antonio, Talon, Manuel, Jaillon, Olivier, Ollitrault, Patrick, Gmitter, Frederick, Rokhsar, Daniel

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A reference genome for common bean and genome-wide analysis of dual domestications von Schmutz, Jeremy, McClean, Phillip E, Mamidi, Sujan, Wu, G Albert, Cannon, Steven B, Grimwood, Jane, Jenkins, Jerry, Shu, Shengqiang, Song, Qijian, Chavarro, Carolina, Torres-Torres, Mirayda, Geffroy, Valerie, Moghaddam, Samira Mafi, Gao, Dongying, Abernathy, Brian, Barry, Kerrie, Blair, Matthew, Brick, Mark A, Chovatia, Mansi, Gepts, Paul, Goodstein, David M, Gonzales, Michael, Hellsten, Uffe, Hyten, David L, Jia, Gaofeng, Kelly, James D, Kudrna, Dave, Lee, Rian, Richard, Manon M S, Miklas, Phillip N, Osorno, Juan M, Rodrigues, Josiane, Thareau, Vincent, Urrea, Carlos A, Wang, Mei, Yu, Yeisoo, Zhang, Ming, Wing, Rod A, Cregan, Perry B, Rokhsar, Daniel S, Jackson, Scott A

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Fine-scale variation in meiotic recombination in Mimulus inferred from population shotgun sequencing von Hellsten, Uffe, Wright, Kevin M., Jenkins, Jerry, Shu, Shengqiang, Yuan, Yaowu, Wessler, Susan R., Schmutz, Jeremy, Willis, John H., Rokhsar, Daniel S.

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Insights into bilaterian evolution from three spiralian genomes von Simakov, Oleg, Marletaz, Ferdinand, Cho, Sung-Jin, Edsinger-Gonzales, Eric, Havlak, Paul, Hellsten, Uffe, Kuo, Dian-Han, Larsson, Tomas, Lv, Jie, Arendt, Detlev, Savage, Robert, Osoegawa, Kazutoyo, de Jong, Pieter, Grimwood, Jane, Chapman, Jarrod A., Shapiro, Harris, Aerts, Andrea, Otillar, Robert P., Terry, Astrid Y., Boore, Jeffrey L., Grigoriev, Igor V., Lindberg, David R., Seaver, Elaine C., Weisblat, David A., Putnam, Nicholas H., Rokhsar, Daniel S.

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The Amphimedon queenslandica genome and the evolution of animal complexity von Srivastava, Mansi, Degnan, Bernard M, Rokhsar, Daniel S, Simakov, Oleg, Chapman, Jarrod, Fahey, Bryony, Gauthier, Marie E. A, Mitros, Therese, Richards, Gemma S, Conaco, Cecilia, Dacre, Michael, Hellsten, Uffe, Larroux, Claire, Putnam, Nicholas H, Stanke, Mario, Adamska, Maja, Darling, Aaron, Degnan, Sandie M, Oakley, Todd H, Plachetzki, David C, Zhai, Yufeng, Adamski, Marcin, Calcino, Andrew, Cummins, Scott F, Goodstein, David M, Harris, Christina, Jackson, Daniel J, Leys, Sally P, Shu, Shengqiang, Woodcroft, Ben J, Vervoort, Michel, Kosik, Kenneth S, Manning, Gerard

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Genome sequence of the palaeopolyploid soybean von Schmutz, Jeremy, Cannon, Steven B, Schlueter, Jessica, Ma, Jianxin, Mitros, Therese, Nelson, William, Hyten, David L, Song, Qijian, Thelen, Jay J, Cheng, Jianlin, Xu, Dong, Hellsten, Uffe, Peto, Myron, Grant, David, Cregan, Perry, Shoemaker, Randy C

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Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization von Putnam, Nicholas H, Srivastava, Mansi, Hellsten, Uffe, Dirks, Bill, Chapman, Jarrod, Salamov, Asaf, Terry, Astrid, Shapiro, Harris, Lindquist, Erika, Kapitonov, Vladimir V, Jurka, Jerzy, Genikhovich, Grigory, Grigoriev, Igor V, Lucas, Susan M, Steele, Robert E, Finnerty, John R, Technau, Ulrich, Martindale, Mark Q, Rokhsar, Daniel S

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The amphioxus genome and the evolution of the chordate karyotype von Satoh, Nori, Rokhsar, Daniel S, Putnam, Nicholas H, Butts, Thomas, Ferrier, David E. K, Furlong, Rebecca F, Hellsten, Uffe, Kawashima, Takeshi, Robinson-Rechavi, Marc, Shoguchi, Eiichi, Terry, Astrid, Yu, Jr-Kai, Benito-Gutiérrez, E lia, Dubchak, Inna, Garcia-Fernàndez, Jordi, Gibson-Brown, Jeremy J, Grigoriev, Igor V, Horton, Amy C, de Jong, Pieter J, Jurka, Jerzy, Kapitonov, Vladimir V, Kohara, Yuji, Kuroki, Yoko, Lindquist, Erika, Lucas, Susan, Osoegawa, Kazutoyo, Pennacchio, Len A, Salamov, Asaf A, Satou, Yutaka, Sauka-Spengler, Tatjana, Schmutz, Jeremy, Shin-I, Tadasu, Toyoda, Atsushi, Bronner-Fraser, Marianne, Fujiyama, Asao, Holland, Linda Z, Holland, Peter W. H

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The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans von King, Nicole, Rokhsar, Daniel, Westbrook, M. Jody, Young, Susan L, Kuo, Alan, Abedin, Monika, Chapman, Jarrod, Fairclough, Stephen, Hellsten, Uffe, Isogai, Yoh, Letunic, Ivica, Marr, Michael, Pincus, David, Putnam, Nicholas, Rokas, Antonis, Wright, Kevin J, Zuzow, Richard, Dirks, William, Good, Matthew, Goodstein, David, Lemons, Derek, Li, Wanqing, Lyons, Jessica B, Morris, Andrea, Nichols, Scott, Richter, Daniel J, Salamov, Asaf, Sequencing, JGI, Bork, Peer, Lim, Wendell A, Manning, Gerard, Miller, W. Todd, McGinnis, William, Shapiro, Harris, Tjian, Robert, Grigoriev, Igor V

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The Trichoplax genome and the nature of placozoans von Carpenter, Meredith L, Signorovitch, Ana Y, Schmutz, Jeremy, Grimwood, Jane, Grigoriev, Igor V, Mitros, Therese, Putnam, Nicholas H, Kawashima, Takeshi, Moreno, Maria A, Buss, Leo W, Srivastava, Mansi, Rokhsar, Daniel S, Begovic, Emina, Shapiro, Harris, Kamm, Kai, Chapman, Jarrod, Hellsten, Uffe, Kuo, Alan, Dellaporta, Stephen L, Salamov, Asaf, Schierwater, Bernd

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Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa von Slavov, Gancho T., DiFazio, Stephen P., Martin, Joel, Schackwitz, Wendy, Muchero, Wellington, Rodgers‐Melnick, Eli, Lipphardt, Mindie F., Pennacchio, Christa P., Hellsten, Uffe, Pennacchio, Len A., Gunter, Lee E., Ranjan, Priya, Vining, Kelly, Pomraning, Kyle R., Wilhelm, Larry J., Pellegrini, Matteo, Mockler, Todd C., Freitag, Michael, Geraldes, Armando, El‐Kassaby, Yousry A., Mansfield, Shawn D., Cronk, Quentin C. B., Douglas, Carl J., Strauss, Steven H., Rokhsar, Dan, Tuskan, Gerald A.

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Young inversion with multiple linked QTLs under selection in a hybrid zone von Lee, Cheng-Ruei, Wang, Baosheng, Mojica, Julius P., Mandáková, Terezie, Prasad, Kasavajhala V. S. K., Goicoechea, Jose Luis, Perera, Nadeesha, Hellsten, Uffe, Hundley, Hope N., Johnson, Jenifer, Grimwood, Jane, Barry, Kerrie, Fairclough, Stephen, Jenkins, Jerry W., Yu, Yeisoo, Kudrna, Dave, Zhang, Jianwei, Talag, Jayson, Golser, Wolfgang, Ghattas, Kathryn, Schranz, M. Eric, Wing, Rod, Lysak, Martin A., Schmutz, Jeremy, Rokhsar, Daniel S., Mitchell-Olds, Thomas

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Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis von Hellsten, Uffe, Khokha, Mustafa K, Grammer, Timothy C, Harland, Richard M, Richardson, Paul, Rokhsar, Daniel S

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The DNA sequence and biology of human chromosome 19 von Grimwood, Jane, Rubin, Edward M, Gordon, Laurie A, Olsen, Anne, Terry, Astrid, Schmutz, Jeremy, Lamerdin, Jane, Hellsten, Uffe, Goodstein, David, Couronne, Olivier, Tran-Gyamfi, Mary, Aerts, Andrea, Altherr, Michael, Ashworth, Linda, Bajorek, Eva, Black, Stacey, Branscomb, Elbert, Caenepeel, Sean, Carrano, Anthony, Caoile, Chenier, Man Chan, Yee, Christensen, Mari, Cleland, Catherine A, Copeland, Alex, Dalin, Eileen, Dehal, Paramvir, Denys, Mirian, Detter, John C, Escobar, Julio, Flowers, Dave, Fotopulos, Dea, Garcia, Carmen, Georgescu, Anca M, Glavina, Tijana, Gomez, Maria, Gonzales, Eidelyn, Groza, Matthew, Hammon, Nancy, Hawkins, Trevor, Haydu, Lauren, Ho, Isaac, Huang, Wayne, Israni, Sanjay, Jett, Jamie, Kadner, Kristen, Kimball, Heather, Kobayashi, Arthur, Larionov, Vladimer, Leem, Sun-Hee, Lopez, Frederick, Lou, Yunian, Lowry, Steve, Malfatti, Stephanie, Martinez, Diego, McCready, Paula, Medina, Catherine, Morgan, Jenna, Nelson, Kathryn, Nolan, Matt, Ovcharenko, Ivan, Pitluck, Sam, Pollard, Martin, Popkie, Anthony P, Predki, Paul, Quan, Glenda, Ramirez, Lucia, Rash, Sam, Retterer, James, Rodriguez, Alex, Rogers, Stephanine, Salamov, Asaf, Salazar, Angelica, She, Xinwei, Smith, Doug, Slezak, Tom, Solovyev, Victor, Thayer, Nina, Tice, Hope, Tsai, Ming, Ustaszewska, Anna, Vo, Nu, Wagner, Mark, Wheeler, Jeremy, Wu, Kevin, Xie, Gary, Yang, Joan, Dubchak, Inna, Furey, Terrence S, DeJong, Pieter, Dickson, Mark, Gordon, David, Eichler, Evan E, Pennacchio, Len A, Richardson, Paul, Stubbs, Lisa, Rokhsar, Daniel S, Myers, Richard M, Lucas, Susan M

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A segmental genomic duplication generates a functional intron von Hellsten, Uffe, Aspden, Julie L., Rio, Donald C., Rokhsar, Daniel S.

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Publisher correction: Young inversion with multiple linked QTLs under selection in a hybrid zone von Lee, Cheng-Ruei, Wang, Baosheng, Mojica, Julius P., Mandáková, Terezie, Prasad, Kasavajhala V. S. K., Luis Goicoechea, Jose, Perera, Nadeesha, Hellsten, Uffe, Hundley, Hope N., Johnson, Jenifer, Grimwood, Jane, Barry, Kerrie, Fairclough, Stephen, Jenkins, Jerry W., Yu, Yeisoo, Kudrna, Dave, Zhang, Jianwei, Talag, Jayson, Golser, Wolfgang, Ghattas, Kathryn, Schranz, M. Eric, Wing, Rod, Lysak, Martin A., Schmutz, Jeremy, Rokhsar, Daniel S., Mitchell-Olds, Thomas

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