Unipept 4.0: Functional Analysis of Metaproteome Data von Gurdeep Singh, Robbert, Tanca, Alessandro, Palomba, Antonio, Van der Jeugt, Felix, Verschaffelt, Pieter, Uzzau, Sergio, Martens, Lennart, Dawyndt, Peter, Mesuere, Bart

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Comparative evaluation of seven commercial products for human serum enrichment/depletion by shotgun proteomics von Pisanu, Salvatore, Biosa, Grazia, Carcangiu, Laura, Uzzau, Sergio, Pagnozzi, Daniela

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Potential and active functions in the gut microbiota of a healthy human cohort von Tanca, Alessandro, Abbondio, Marcello, Palomba, Antonio, Fraumene, Cristina, Manghina, Valeria, Cucca, Francesco, Fiorillo, Edoardo, Uzzau, Sergio

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Evaluating the impact of different sequence databases on metaproteome analysis: insights from a lab-assembled microbial mixture von Tanca, Alessandro, Palomba, Antonio, Deligios, Massimo, Cubeddu, Tiziana, Fraumene, Cristina, Biosa, Grazia, Pagnozzi, Daniela, Addis, Maria Filippa, Uzzau, Sergio

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Genetic Variants Regulating Immune Cell Levels in Health and Disease von Orrù, Valeria, Steri, Maristella, Sole, Gabriella, Sidore, Carlo, Virdis, Francesca, Dei, Mariano, Lai, Sandra, Zoledziewska, Magdalena, Busonero, Fabio, Mulas, Antonella, Floris, Matteo, Mentzen, Wieslawa I., Urru, Silvana A.M., Olla, Stefania, Marongiu, Michele, Piras, Maria G., Lobina, Monia, Maschio, Andrea, Pitzalis, Maristella, Urru, Maria F., Marcelli, Marco, Cusano, Roberto, Deidda, Francesca, Serra, Valentina, Oppo, Manuela, Pilu, Rosella, Reinier, Frederic, Berutti, Riccardo, Pireddu, Luca, Zara, Ilenia, Porcu, Eleonora, Kwong, Alan, Brennan, Christine, Tarrier, Brendan, Lyons, Robert, Kang, Hyun M., Uzzau, Sergio, Atzeni, Rossano, Valentini, Maria, Firinu, Davide, Leoni, Lidia, Rotta, Gianluca, Naitza, Silvia, Angius, Andrea, Congia, Mauro, Whalen, Michael B., Jones, Chris M., Schlessinger, David, Abecasis, Gonçalo R., Fiorillo, Edoardo, Sanna, Serena, Cucca, Francesco

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Critical Assessment of MetaProteome Investigation (CAMPI): a multi-laboratory comparison of established workflows von Van Den Bossche, Tim, Kunath, Benoit J., Schallert, Kay, Schäpe, Stephanie S., Abraham, Paul E., Armengaud, Jean, Arntzen, Magnus Ø., Bassignani, Ariane, Benndorf, Dirk, Fuchs, Stephan, Giannone, Richard J., Griffin, Timothy J., Hagen, Live H., Halder, Rashi, Henry, Céline, Hettich, Robert L., Heyer, Robert, Jagtap, Pratik, Jehmlich, Nico, Jensen, Marlene, Juste, Catherine, Kleiner, Manuel, Langella, Olivier, Lehmann, Theresa, Leith, Emma, May, Patrick, Mesuere, Bart, Miotello, Guylaine, Peters, Samantha L., Pible, Olivier, Queiros, Pedro T., Reichl, Udo, Renard, Bernhard Y., Schiebenhoefer, Henning, Sczyrba, Alexander, Tanca, Alessandro, Trappe, Kathrin, Trezzi, Jean-Pierre, Uzzau, Sergio, Verschaffelt, Pieter, von Bergen, Martin, Wilmes, Paul, Wolf, Maximilian, Martens, Lennart, Muth, Thilo

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Metaproteogenomics Reveals Taxonomic and Functional Changes between Cecal and Fecal Microbiota in Mouse von Tanca, Alessandro, Manghina, Valeria, Fraumene, Cristina, Palomba, Antonio, Abbondio, Marcello, Deligios, Massimo, Silverman, Michael, Uzzau, Sergio

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Systematic identification of NF90 target RNAs by iCLIP analysis von Lodde, Valeria, Floris, Matteo, Munk, Rachel, Martindale, Jennifer L., Piredda, Davide, Napodano, Catello Mario Panu, Cucca, Francesco, Uzzau, Sergio, Abdelmohsen, Kotb, Gorospe, Myriam, Noh, Ji Heon, Idda, M. Laura

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Benchmarking low- and high-throughput protein cleanup and digestion methods for human fecal metaproteomics von Tanca, Alessandro, Deledda, Maria Antonietta, De Diego, Laura, Abbondio, Marcello, Uzzau, Sergio

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Effect of Different Disease-Modifying Therapies on Humoral Response to BNT162b2 Vaccine in Sardinian Multiple Sclerosis Patients von Pitzalis, Maristella, Idda, Maria Laura, Lodde, Valeria, Loizedda, Annalisa, Lobina, Monia, Zoledziewska, Magdalena, Virdis, Francesca, Delogu, Giuseppe, Pirinu, Federica, Marini, Maria Giuseppina, Mingoia, Maura, Frau, Jessica, Lorefice, Lorena, Fronza, Marzia, Carmagnini, Daniele, Carta, Elisa, Orru, Valeria, Uzzau, Sergio, Solla, Paolo, Loi, Federica, Devoto, Marcella, Steri, Maristella, Fiorillo, Edoardo, Floris, Matteo, Zarbo, Ignazio Roberto, Cocco, Eleonora, Cucca, Francesco

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Novel docetaxel-loaded nanoparticles based on poly(lactide-co-caprolactone) and poly(lactide-co-glycolide-co-caprolactone) for prostate cancer treatment: formulation, characterizat... von Sanna, Vanna, Roggio, Anna Maria, Posadino, Anna Maria, Cossu, Annalisa, Marceddu, Salvatore, Mariani, Alberto, Alzari, Valeria, Uzzau, Sergio, Pintus, Gianfranco, Sechi, Mario

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Caloric restriction promotes rapid expansion and long-lasting increase of Lactobacillus in the rat fecal microbiota von Fraumene, Cristina, Manghina, Valeria, Cadoni, Erika, Marongiu, Fabio, Abbondio, Marcello, Serra, Monica, Palomba, Antonio, Tanca, Alessandro, Laconi, Ezio, Uzzau, Sergio

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Lack of NLRP3-inflammasome leads to gut-liver axis derangement, gut dysbiosis and a worsened phenotype in a mouse model of NAFLD von Pierantonelli, Irene, Rychlicki, Chiara, Agostinelli, Laura, Giordano, Debora Maria, Gaggini, Melania, Fraumene, Cristina, Saponaro, Chiara, Manghina, Valeria, Sartini, Loris, Mingarelli, Eleonora, Pinto, Claudio, Buzzigoli, Emma, Trozzi, Luciano, Giordano, Antonio, Marzioni, Marco, Minicis, Samuele De, Uzzau, Sergio, Cinti, Saverio, Gastaldelli, Amalia, Svegliati-Baroni, Gianluca

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Epitope Tagging of Chromosomal Genes in Salmonella von Uzzau, Sergio, Figueroa-Bossi, Nara, Rubino, Salvatore, Bossi, Lionello

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Metaproteomic assessment of gut microbial and host functional perturbations in Helicobacter pylori-infected patients subjected to an antimicrobial protocol von Abbondio, Marcello, Tanca, Alessandro, De Diego, Laura, Sau, Rosangela, Bibbò, Stefano, Pes, Giovanni Mario, Dore, Maria Pina, Uzzau, Sergio

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Vaccination and Antiviral Treatment Reduce the Time to Negative SARS-CoV-2 Swab: A Real-Life Study von De Vito, Andrea, Moi, Giulia, Saderi, Laura, Puci, Mariangela V, Colpani, Agnese, Firino, Laura, Puggioni, Anna, Uzzau, Sergio, Babudieri, Sergio, Sotgiu, Giovanni, Madeddu, Giordano

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Time-restricted feeding induces Lactobacillus- and Akkermansia-specific functional changes in the rat fecal microbiota von Palomba, Antonio, Tanca, Alessandro, Abbondio, Marcello, Sau, Rosangela, Serra, Monica, Marongiu, Fabio, Fraumene, Cristina, Pagnozzi, Daniela, Laconi, Ezio, Uzzau, Sergio

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Fecal Metaproteomic Analysis Reveals Unique Changes of the Gut Microbiome Functions After Consumption of Sourdough Carasau Bread von Abbondio, Marcello, Palomba, Antonio, Tanca, Alessandro, Fraumene, Cristina, Pagnozzi, Daniela, Serra, Monica, Marongiu, Fabio, Laconi, Ezio, Uzzau, Sergio

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Height-reducing variants and selection for short stature in Sardinia von Zoledziewska, Magdalena, Sidore, Carlo, Chiang, Charleston W K, Sanna, Serena, Mulas, Antonella, Steri, Maristella, Busonero, Fabio, Marcus, Joseph H, Marongiu, Michele, Maschio, Andrea, Del Vecchyo, Diego Ortega, Floris, Matteo, Meloni, Antonella, Delitala, Alessandro, Concas, Maria Pina, Murgia, Federico, Biino, Ginevra, Vaccargiu, Simona, Nagaraja, Ramaiah, Lohmueller, Kirk E, Timpson, Nicholas J, Soranzo, Nicole, Tachmazidou, Ioanna, Dedoussis, George, Zeggini, Eleftheria, Uzzau, Sergio, Jones, Chris, Lyons, Robert, Angius, Andrea, Abecasis, Gonçalo R, Novembre, John, Schlessinger, David, Cucca, Francesco

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The Metaproteomics Initiative: a coordinated approach for propelling the functional characterization of microbiomes von van den Bossche, Tim, Arntzen, Magnus O., Becher, Dorte, Benndorf, Dirk, Eijsink, Vincent G. H., Henry, Celine, Jagtap, Pratik D., Jehmlich, Nico, Juste, Catherine, Kunath, Benoit J., Mesuere, Bart, Muth, Thilo, Pope, Phillip B., Seifert, Jana, Tanca, Alessandro, Uzzau, Sergio, Wilmes, Paul, Hettich, Robert L., Armengaud, Jean

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