Functional profiling of COVID-19 respiratory tract microbiomes von Haiminen, Niina, Utro, Filippo, Seabolt, Ed, Parida, Laxmi

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Correction: A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones von Utro, Filippo, Levovitz, Chaya, Rhrissorrakrai, Kahn, Parida, Laxmi

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A common methodological phylogenomics framework for intra-patient heteroplasmies to infer SARS-CoV-2 sublineages and tumor clones von Utro, Filippo, Levovitz, Chaya, Rhrissorrakrai, Kahn, Parida, Laxmi

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Parallel Genomic Alterations of Antigen and Payload Targets Mediate Polyclonal Acquired Clinical Resistance to Sacituzumab Govitecan in Triple-Negative Breast Cancer von Coates, James T, Sun, Sheng, Leshchiner, Ignaty, Thimmiah, Nayana, Martin, Elizabeth E, McLoughlin, Daniel, Danysh, Brian P, Slowik, Kara, Jacobs, Raquel A, Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Denault, Elyssa, Walmsley, Charlotte S, Kambadakone, Avinash, Stone, James R, Isakoff, Steven J, Parida, Laxmi, Juric, Dejan, Getz, Gad, Bardia, Aditya, Ellisen, Leif W

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Textual data compression in computational biology: a synopsis von Giancarlo, Raffaele, Scaturro, Davide, Utro, Filippo

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Enhancing Next‐Generation Sequencing‐Guided Cancer Care Through Cognitive Computing von Patel, Nirali M., Michelini, Vanessa V., Snell, Jeff M., Balu, Saianand, Hoyle, Alan P., Parker, Joel S., Hayward, Michele C., Eberhard, David A., Salazar, Ashley H., McNeillie, Patrick, Xu, Jia, Huettner, Claudia S., Koyama, Takahiko, Utro, Filippo, Rhrissorrakrai, Kahn, Norel, Raquel, Bilal, Erhan, Royyuru, Ajay, Parida, Laxmi, Earp, H. Shelton, Grilley‐Olson, Juneko E., Hayes, D. Neil, Harvey, Stephen J., Sharpless, Norman E., Kim, William Y.

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K- Mer Analyses Reveal Different Evolutionary Histories of Alpha, Beta, and Gamma Papillomaviruses von Chen, Zigui, Utro, Filippo, Platt, Daniel, DeSalle, Rob, Parida, Laxmi, Chan, Paul K S, Burk, Robert D

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Pirtobrutinib targets BTK C481S in ibrutinib-resistant CLL but second-site BTK mutations lead to resistance von Naeem, Aishath, Utro, Filippo, Wang, Qing, Cha, Justin, Vihinen, Mauno, Martindale, Stephen, Zhou, Yinglu, Ren, Yue, Tyekucheva, Svitlana, Kim, Annette S., Fernandes, Stacey M., Saksena, Gordon, Rhrissorrakrai, Kahn, Levovitz, Chaya, Danysh, Brian P., Slowik, Kara, Jacobs, Raquel A., Davids, Matthew S., Lederer, James A., Zain, Rula, Smith, C. I. Edvard, Leshchiner, Ignaty, Parida, Laxmi, Getz, Gad, Brown, Jennifer R.

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Computational cluster validation for microarray data analysis: experimental assessment of Clest, Consensus Clustering, Figure of Merit, Gap Statistics and Model Explorer von Giancarlo, Raffaele, Scaturro, Davide, Utro, Filippo

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Dark-matter matters: Discriminating subtle blood cancers using the darkest DNA von Parida, Laxmi, Haferlach, Claudia, Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Kern, Wolfgang, Nadarajah, Niroshan, Twardziok, Sven, Hutter, Stephan, Meggendorfer, Manja, Walter, Wencke, Baer, Constance, Haferlach, Torsten

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AI-enabled evaluation of genome-wide association relevance and polygenic risk score prediction in Alzheimer's disease von Platt, Daniel E., Guzmán-Sáenz, Aldo, Bose, Aritra, Saha, Subrata, Utro, Filippo, Parida, Laxmi

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Re-purposing software for functional characterization of the microbiome von Gardiner, Laura-Jayne, Haiminen, Niina, Utro, Filippo, Parida, Laxmi, Seabolt, Ed, Krishna, Ritesh, Kaufman, James H

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Multiple Loci Selection with Multi-Way Epistasis in Coalescence with Recombination von Bose, Aritra, Utro, Filippo, Platt, Daniel E., Parida, Laxmi

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Sum of parts is greater than the whole: inference of common genetic history of populations von Utro, Filippo, Pybus, Marc, Parida, Laxmi

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Speeding up the Consensus Clustering methodology for microarray data analysis von Giancarlo, Raffaele, Utro, Filippo

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Hierarchically Labeled Database Indexing Allows Scalable Characterization of Microbiomes von Utro, Filippo, Haiminen, Niina, Siragusa, Enrico, Gardiner, Laura-Jayne, Seabolt, Ed, Krishna, Ritesh, Kaufman, James H., Parida, Laxmi

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ARG-based genome-wide analysis of cacao cultivars von Utro, Filippo, Cornejo, Omar Eduardo, Livingstone, Donald, Motamayor, Juan Carlos, Parida, Laxmi

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Lesion Shedding Model: unraveling site-specific contributions to ctDNA von Rhrissorrakrai, Kahn, Utro, Filippo, Levovitz, Chaya, Parida, Laxmi

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Foreword: Algorithms, Strings and Theoretical Approaches in the Big Data Era – Special Issue in Honor of the 60th Birthday of Professor Raffaele Giancarlo von Rombo, Simona E., Utro, Filippo

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In vitro versus in vivo compositional landscapes of histone sequence preferences in eucaryotic genomes von Giancarlo, Raffaele, Rombo, Simona E, Utro, Filippo

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