Fundamental limits on dynamic inference from single-cell snapshots von Weinreb, Caleb, Wolock, Samuel, Tusi, Betsabeh K., Socolovsky, Merav, Klein, Allon M.

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A large fraction of extragenic RNA pol II transcription sites overlap enhancers von De Santa, Francesca, Barozzi, Iros, Mietton, Flore, Ghisletti, Serena, Polletti, Sara, Tusi, Betsabeh Khoramian, Muller, Heiko, Ragoussis, Jiannis, Wei, Chia-Lin, Natoli, Gioacchino

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High-throughput single-cell fate potential assay of murine hematopoietic progenitors in vitro von Khoramian Tusi, Betsabeh, Socolovsky, Merav

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Akkermansia muciniphila phospholipid induces homeostatic immune responses von Bae, Munhyung, Cassilly, Chelsi D., Liu, Xiaoxi, Park, Sung-Moo, Tusi, Betsabeh Khoramian, Chen, Xiangjun, Kwon, Jaeyoung, Filipčík, Pavel, Bolze, Andrew S., Liu, Zehua, Vlamakis, Hera, Graham, Daniel B., Buhrlage, Sara J., Xavier, Ramnik J., Clardy, Jon

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Population snapshots predict early haematopoietic and erythroid hierarchies von Tusi, Betsabeh Khoramian, Wolock, Samuel L., Weinreb, Caleb, Hwang, Yung, Hidalgo, Daniel, Zilionis, Rapolas, Waisman, Ari, Huh, Jun R., Klein, Allon M., Socolovsky, Merav

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Setd1a and NURF mediate chromatin dynamics and gene regulation during erythroid lineage commitment and differentiation von Li, Ying, Schulz, Vincent P, Deng, Changwang, Li, Guangyao, Shen, Yong, Tusi, Betsabeh K, Ma, Gina, Stees, Jared, Qiu, Yi, Steiner, Laurie A, Zhou, Lei, Zhao, Keji, Bungert, Jörg, Gallagher, Patrick G, Huang, Suming

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The H3K27 Demethylase JMJD3 Is Required for Maintenance of the Embryonic Respiratory Neuronal Network, Neonatal Breathing, and Survival von Burgold, Thomas, Voituron, Nicolas, Caganova, Marieta, Tripathi, Prem Prakash, Menuet, Clement, Tusi, Betsabeh Khoramian, Spreafico, Fabio, Bévengut, Michelle, Gestreau, Christian, Buontempo, Serena, Simeone, Antonio, Kruidenier, Laurens, Natoli, Gioacchino, Casola, Stefano, Hilaire, Gérard, Testa, Giuseppe

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Jmjd3 contributes to the control of gene expression in LPS-activated macrophages von De Santa, Francesca, Narang, Vipin, Yap, Zhei Hwee, Tusi, Betsabeh Khoramian, Burgold, Thomas, Austenaa, Liv, Bucci, Gabriele, Caganova, Marieta, Notarbartolo, Samuele, Casola, Stefano, Testa, Giuseppe, Sung, Wing-Kin, Wei, Chia-Lin, Natoli, Gioacchino

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The lymphoma-associated NPM-ALK oncogene elicits a p16INK4a/pRb-dependent tumor-suppressive pathway von Martinelli, Paola, Bonetti, Paola, Sironi, Cristina, Pruneri, Giancarlo, Fumagalli, Caterina, Raviele, Paola Rafaniello, Volorio, Sara, Pileri, Stefano, Chiarle, Roberto, McDuff, Fiona Kate Elizabeth, Tusi, Betsabeh Khoramian, Turner, Suzanne D., Inghirami, Giorgio, Pelicci, Pier Giuseppe, Colombo, Emanuela

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Activation of the Erythroid Transcriptional Program in Murine Adult Bone Marrow Takes Place during a Faster, Shorter S Phase and Is Dependent on S Phase Progression von Tusi, Betsabeh Khoramian, Hidalgo, Daniel, Socolovsky, Merav

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B cell genomics behind cross-neutralization of SARS-CoV-2 variants and SARS-CoV von Scheid, Johannes F., Barnes, Christopher O., Eraslan, Basak, Hudak, Andrew, Keeffe, Jennifer R., Cosimi, Lisa A., Brown, Eric M., Muecksch, Frauke, Weisblum, Yiska, Zhang, Shuting, Delorey, Toni, Woolley, Ann E., Ghantous, Fadi, Park, Sung-Moo, Phillips, Devan, Tusi, Betsabeh, Huey-Tubman, Kathryn E., Cohen, Alexander A., Gnanapragasam, Priyanthi N.P., Rzasa, Kara, Hatziioanno, Theodora, Durney, Michael A., Gu, Xiebin, Tada, Takuya, Landau, Nathaniel R., West, Anthony P., Rozenblatt-Rosen, Orit, Seaman, Michael S., Baden, Lindsey R., Graham, Daniel B., Deguine, Jacques, Bieniasz, Paul D., Regev, Aviv, Hung, Deborah, Bjorkman, Pamela J., Xavier, Ramnik J.

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Lyme Disease, Borrelia burgdorferi, and Lipid Immunogens von Szamosvári, Dávid, Bae, Munhyung, Bang, Sunghee, Tusi, Betsabeh Khoramian, Cassilly, Chelsi D, Park, Sung-Moo, Graham, Daniel B, Xavier, Ramnik J, Clardy, Jon

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Genotyping results of Iranian PCG families suggests one or more PCG locus other than GCL3A, GCL3B, and GCL3C exist von Narooie-Nejad, Mehrnaz, Chitsazian, Fereshteh, Khoramian Tusi, Betsabeh, Mousavi, Faride, Houshmand, Massoud, Rohani, Mohammad R, Hosseinipour, Azam S, Rismanchian, Akram, Elahi, Elahe

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The IL-17 Receptor IL-17RA Is Expressed By Early Erythroid Progenitors and Stimulates Erythropoiesis von Hwang, Yung, Hidalgo, Daniel, Khoramian Tusi, Betsabeh, Wolock, Samuel, Weinreb, Caleb, Klein, Allon Moshe, Socolovsky, Merav

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CYP1B1 Mutation Profile of Iranian Primary Congenital Glaucoma Patients and Associated Haplotypes von Chitsazian, Fereshteh, Tusi, Betsabeh Khoramian, Elahi, Elahe, Saroei, Heidar Amini, Sanati, Mohammad H, Yazdani, Shahin, Pakravan, Mohammad, Nilforooshan, Navid, Eslami, Yadollah, Mehrjerdi, Mohammad Ali Zare, Zareei, Reza, Jabbarvand, Mahmood, Abdolahi, Ali, Lasheyee, Ali R, Etemadi, Arash, Bayat, Behnaz, Sadeghi, Mehdi, Banoei, Mohammad M, Ghafarzadeh, Behnam, Rohani, Mohammad R, Rismanchian, Akram, Thorstenson, Yvonne, Sarfarazi, Mansoor

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Setd1a regulates progenitor B‐cell‐to‐precursor B‐cell development through histone H3 lysine 4 trimethylation and Ig heavy‐chain rearrangement von Tusi, Betsabeh Khoramian, Deng, Changwang, Salz, Tal, Zeumer, Leilani, Li, Yangqiu, So, Chi Wai Eric, Morel, Laurence M., Qiu, Yi, Huang, Suming

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Reconstructing Early Erythroid Development In Vivo Using Single-Cell Transcriptomics von Khoramian Tusi, Betsabeh, Wolock, Samuel, Weinreb, Caleb, Hwang, Yung, Hidalgo, Daniel, Klein, Allon Moshe, Socolovsky, Merav

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Population Balance Reconstruction of the Hematopoietic Differentiation Hierarchy von Weinreb, Caleb, Wolock, Samuel, Tusi, Betsabeh Khoramian, Socolovsky, Merav, Klein, Allon Moshe

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Cell Type- and Stimulation-Dependent Transcriptional Programs Regulated by Atg16L1 and Its Crohn's Disease Risk Variant T300A von Varma, Mukund, Kadoki, Motohiko, Lefkovith, Ariel, Conway, Kara L, Gao, Kevin, Mohanan, Vishnu, Tusi, Betsabeh Khoramian, Graham, Daniel B, Latorre, Isabel J, Tolonen, Andrew C, Khor, Bernard, Ng, Aylwin, Xavier, Ramnik J

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Translational genetics identifies a phosphorylation switch in CARD9 required for innate inflammatory responses von Brandt, Marta, Cao, Zhifang, Krishna, Chirag, Reedy, Jennifer L., Gu, Xiebin, Dutko, Richard A., Oliver, Blayne A., Tusi, Betsabeh Khoramian, Park, Jihye, Richey, Lauren, Segerstolpe, Åsa, Litwiler, Scott, Creasey, Elizabeth A., Carey, Kimberly L., Vyas, Jatin M., Graham, Daniel B., Xavier, Ramnik J.

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