Improved PEP-FOLD Approach for Peptide and Miniprotein Structure Prediction von Shen, Yimin, Maupetit, Julien, Derreumaux, Philippe, Tufféry, Pierre

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PEP-FOLD3: faster denovo structure prediction for linear peptides in solution and in complex von Lamiable, Alexis, Thevenet, Pierre, Rey, Julien, Vavrusa, Marek, Derreumaux, Philippe, Tufféry, Pierre

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Fpocket: an open source platform for ligand pocket detection von Le Guilloux, Vincent, Schmidtke, Peter, Tuffery, Pierre

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fast method for large-scale De Novo peptide and miniprotein structure prediction von Maupetit, Julien, Derreumaux, Philippe, Tufféry, Pierre

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PEP-FOLD: an updated de novo structure prediction server for both linear and disulfide bonded cyclic peptides von Thévenet, Pierre, Shen, Yimin, Maupetit, Julien, Guyon, Frédéric, Derreumaux, Philippe, Tufféry, Pierre

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Exploring a Structural Data Mining Approach to Design Linkers for Head-to-Tail Peptide Cyclization von Karami, Yasaman, Murail, Samuel, Giribaldi, Julien, Lefranc, Benjamin, Defontaine, Florian, Lesouhaitier, Olivier, Leprince, Jérôme, de Vries, Sjoerd, Tufféry, Pierre

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Frog2: Efficient 3D conformation ensemble generator for small compounds von Miteva, Maria A, Guyon, Frederic, Tufféry, Pierre

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fpocket: online tools for protein ensemble pocket detection and tracking von Schmidtke, Peter, Le Guilloux, Vincent, Maupetit, Julien, Tufféry, Pierre

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DockSurf: A Molecular Modeling Software for the Prediction of Protein/Surface Adhesion von Barbault, Florent, Brémond, Eric, Rey, Julien, Tufféry, Pierre, Maurel, François

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Interfering peptides targeting protein–protein interactions: the next generation of drugs? von Bruzzoni-Giovanelli, Heriberto, Alezra, Valerie, Wolff, Nicolas, Dong, Chang-Zhi, Tuffery, Pierre, Rebollo, Angelita

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A refined pH-dependent coarse-grained model for peptide structure prediction in aqueous solution von Tufféry, Pierre, Derreumaux, Philippe

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InterEvDock: a docking server to predict the structure of protein-protein interactions using evolutionary information von Yu, Jinchao, Vavrusa, Marek, Andreani, Jessica, Rey, Julien, Tufféry, Pierre, Guerois, Raphaël

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PEP-SiteFinder: a tool for the blind identification of peptide binding sites on protein surfaces von Saladin, Adrien, Rey, Julien, Thévenet, Pierre, Zacharias, Martin, Moroy, Gautier, Tufféry, Pierre

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InterEvDock2: an expanded server for protein docking using evolutionary and biological information from homology models and multimeric inputs von Quignot, Chloé, Rey, Julien, Yu, Jinchao, Tufféry, Pierre, Guerois, Raphaël, Andreani, Jessica

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DaReUS-Loop: accurate loop modeling using fragments from remote or unrelated proteins von Karami, Yasaman, Guyon, Frédéric, De Vries, Sjoerd, Tufféry, Pierre

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The CH1 alpha domain of mucosal gp41 IgA contributes to antibody specificity and antiviral functions in HIV-1 highly exposed Sero-Negative individuals von Khamassi, Marwa, Xu, Lin, Rey, Julien, Duchemin, Maxence, Bouceba, Tahar, Tuffery, Pierre, Tudor, Daniela, Bomsel, Morgane

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Probing Protein Interaction Networks by Combining MS-Based Proteomics and Structural Data Integration von Postic, Guillaume, Marcoux, Julien, Reys, Victor, Andreani, Jessica, Vandenbrouck, Yves, Bousquet, Marie-Pierre, Mouton-Barbosa, Emmanuelle, Cianférani, Sarah, Burlet-Schiltz, Odile, Guerois, Raphael, Labesse, Gilles, Tufféry, Pierre

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DaReUS-Loop: a web server to model multiple loops in homology models von Karami, Yasaman, Rey, Julien, Postic, Guillaume, Murail, Samuel, Tufféry, Pierre, de Vries, Sjoerd J

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PatchSearch: a web server for off-target protein identification von Rey, Julien, Rasolohery, Inès, Tufféry, Pierre, Guyon, Frédéric, Moroy, Gautier

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MTiOpenScreen: a web server for structure-based virtual screening von Labbé, Céline M, Rey, Julien, Lagorce, David, Vavruša, Marek, Becot, Jérome, Sperandio, Olivier, Villoutreix, Bruno O, Tufféry, Pierre, Miteva, Maria A

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