Contribution of Sequence Motif, Chromatin State, and DNA Structure Features to Predictive Models of Transcription Factor Binding in Yeast von Tsai, Zing Tsung-Yeh, Shiu, Shin-Han, Tsai, Huai-Kuang

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Transgenic refractory Aedes aegypti lines are resistant to multiple serotypes of dengue virus von Liu, Wei-Liang, Hsu, Chia-Wei, Chan, Shih-Peng, Yen, Pei-Shi, Su, Matthew P., Li, Jian-Chiuan, Li, Hsing-Han, Cheng, Lie, Tang, Cheng-Kang, Ko, Shih-Hsun, Tsai, Huai-Kuang, Tsai, Zing Tsung-Yeh, Akbari, Omar S., Failloux, Anna-Bella, Chen, Chun-Hong

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Somatic expression of piRNA and associated machinery in the mouse identifies short, tissue-specific piRNA von Perera, Bambarendage P.U., Tsai, Zing Tsung-Yeh, Colwell, Mathia L., Jones, Tamara R., Goodrich, Jaclyn M., Wang, Kai, Sartor, Maureen A., Faulk, Christopher, Dolinoy, Dana C.

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Comparative genomic analyses highlight the contribution of pseudogenized protein-coding genes to human lincRNAs von Liu, Wan-Hsin, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang

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Genome-wide analysis of enhancer RNA in gene regulation across 12 mouse tissues von Cheng, Jen-Hao, Pan, David Zhi-Chao, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang

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Determinants of nucleosome positioning and their influence on plant gene expression von Liu, Ming-Jung, Seddon, Alexander E, Tsai, Zing Tsung-Yeh, Major, Ian T, Floer, Monique, Howe, Gregg A, Shiu, Shin-Han

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The NIEHS TaRGET II Consortium and environmental epigenomics von Wang, Ting, Pehrsson, Erica C, Purushotham, Deepak, Li, Daofeng, Zhuo, Xiaoyu, Zhang, Bo, Lawson, Heather A, Province, Michael A, Krapp, Christopher, Lan, Yemin, Coarfa, Cristian, Katz, Tiffany A, Tang, Wan Yee, Wang, Zhibin, Biswal, Shyam, Rajagopalan, Sanjay, Colacino, Justin A, Tsai, Zing Tsung-Yeh, Sartor, Maureen A, Neier, Kari, Dolinoy, Dana C, Pinto, Jayant, Hamanaka, Robert B, Mutlu, Gokhan M, Patisaul, Heather B, Aylor, David L, Crawford, Gregory E, Wiltshire, Tim, Chadwick, Lisa H, Duncan, Christopher G, Garton, Amanda E, McAllister, Kimberly A, Bartolomei, Marisa S, Walker, Cheryl L, Tyson, Frederick L

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A Model-Based Approach for Identifying Functional Intergenic Transcribed Regions and Noncoding RNAs von Lloyd, John P, Tsai, Zing Tsung-Yeh, Sowers, Rosalie P, Panchy, Nicholas L, Shiu, Shin-Han

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Author Correction: Transgenic refractory Aedes aegypti lines are resistant to multiple serotypes of dengue virus von Liu, Wei-Liang, Hsu, Chia-Wei, Chan, Shih-Peng, Yen, Pei-Shi, Su, Matthew P., Li, Jian-Chiuan, Li, Hsing-Han, Cheng, Lie, Tang, Cheng-Kang, Ko, Shih-Hsun, Tsai, Huai-Kuang, Tsai, Zing Tsung-Yeh, Akbari, Omar S., Failloux, Anna-Bella, Chen, Chun-Hong

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Poly-Enrich: count-based methods for gene set enrichment testing with genomic regions von Lee, Christopher T, Cavalcante, Raymond G, Lee, Chee, Qin, Tingting, Patil, Snehal, Wang, Shuze, Tsai, Zing T Y, Boyle, Alan P, Sartor, Maureen A

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Defining Functional Genic Regions in the Human Genome through Integration of Biochemical, Evolutionary, and Genetic Evidence von Tsai, Zing Tsung-Yeh, Lloyd, John P, Shiu, Shin-Han

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The CrdRS two‐component system in Helicobacter pylori responds to nitrosative stress von Hung, Chiu‐Lien, Cheng, Hsin‐Hung, Hsieh, Wan‐Chen, Tsai, Zing Tsung‐Yeh, Tsai, Huai‐Kuang, Chu, Chia‐Han, Hsieh, Wen‐Ping, Chen, Yi‐Fan, Tsou, Yu, Lai, Chih‐Ho, Wang, Wen‐Ching

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Tissue and sex-specific programming of DNA methylation by perinatal lead exposure: implications for environmental epigenetics studies von Svoboda, Laurie K., Neier, Kari, Wang, Kai, Cavalcante, Raymond G., Rygiel, Christine A., Tsai, Zing, Jones, Tamara R., Liu, Siyu, Goodrich, Jaclyn M., Lalancette, Claudia, Colacino, Justin A., Sartor, Maureen A., Dolinoy, Dana C.

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Borders of Cis -Regulatory DNA Sequences Preferentially Harbor the Divergent Transcription Factor Binding Motifs in the Human Genome von Huang, Jia-Hsin, Kwan, Ryan Shun-Yuen, Tsai, Zing Tsung-Yeh, Lin, Tzu-Chieh, Tsai, Huai-Kuang

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Role of antisense RNAs in evolution of yeast regulatory complexity von Lin, Chih-Hsu, Tsai, Zing Tsung-Yeh, Wang, Daryi

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Evolution of cis-regulatory elements in yeast de novo and duplicated new genes von Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang, Cheng, Jen-Hao, Lin, Chih-Hsu, Tsai, Yuan-Fan, Wang, Daryi

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Associations between intronic non-B DNA structures and exon skipping von Tsai, Zing Tsung-Yeh, Chu, Wen-Yi, Cheng, Jen-Hao, Tsai, Huai-Kuang

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The impact of trans-regulation on the evolutionary rates of metazoan proteins von Chen, Yi-Ching, Cheng, Jen-Hao, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang, Chuang, Trees-Juen

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Impact of DNA-binding position variants on yeast gene expression von Swamy, Krishna B.S, Cho, Chung-Yi, Chiang, Sufeng, Tsai, Zing Tsung-Yeh, Tsai, Huai-Kuang

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Analysis of the association between transcription factor binding site variants and distinct accompanying regulatory motifs in yeast von Chiang, Sufeng, Swamy, Krishna B.S., Hsu, Ting-Wei, Tsai, Zing Tsung-Yeh, Lu, Henry Horng-Shing, Wang, Daryi, Tsai, Huai-Kuang

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