A systematically improved high quality genome and transcriptome of the human blood fluke Schistosoma mansoni von Protasio, Anna V, Tsai, Isheng J, Babbage, Anne, Nichol, Sarah, Hunt, Martin, Aslett, Martin A, De Silva, Nishadi, Velarde, Giles S, Anderson, Tim J C, Clark, Richard C, Davidson, Claire, Dillon, Gary P, Holroyd, Nancy E, LoVerde, Philip T, Lloyd, Christine, McQuillan, Jacquelline, Oliveira, Guilherme, Otto, Thomas D, Parker-Manuel, Sophia J, Quail, Michael A, Wilson, R Alan, Zerlotini, Adhemar, Dunne, David W, Berriman, Matthew

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Assessment of helminth biodiversity in wild rats using 18S rDNA based metagenomics von Tanaka, Ryusei, Hino, Akina, Tsai, Isheng J, Palomares-Rius, Juan Emilio, Yoshida, Ayako, Ogura, Yoshitoshi, Hayashi, Tetsuya, Maruyama, Haruhiko, Kikuchi, Taisei

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Population genomics of the wild yeast Saccharomyces paradoxus: Quantifying the life cycle von Tsai, Isheng J, Bensasson, Douda, Burt, Austin, Koufopanou, Vassiliki

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Biology and genome of a newly discovered sibling species of Caenorhabditis elegans von Kanzaki, Natsumi, Tsai, Isheng J., Tanaka, Ryusei, Hunt, Vicky L., Liu, Dang, Tsuyama, Kenji, Maeda, Yasunobu, Namai, Satoshi, Kumagai, Ryohei, Tracey, Alan, Holroyd, Nancy, Doyle, Stephen R., Woodruff, Gavin C., Murase, Kazunori, Kitazume, Hiromi, Chai, Cynthia, Akagi, Allison, Panda, Oishika, Ke, Huei-Mien, Schroeder, Frank C., Wang, John, Berriman, Matthew, Sternberg, Paul W., Sugimoto, Asako, Kikuchi, Taisei

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Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus von Kikuchi, Taisei, Cotton, James A, Dalzell, Jonathan J, Hasegawa, Koichi, Kanzaki, Natsumi, McVeigh, Paul, Takanashi, Takuma, Tsai, Isheng J, Assefa, Samuel A, Cock, Peter J A, Otto, Thomas Dan, Hunt, Martin, Reid, Adam J, Sanchez-Flores, Alejandro, Tsuchihara, Kazuko, Yokoi, Toshiro, Larsson, Mattias C, Miwa, Johji, Maule, Aaron G, Sahashi, Norio, Jones, John T, Berriman, Matthew

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Genetic Differentiation and Spatial Structure of Phellinus noxius, the Causal Agent of Brown Root Rot of Woody Plants in Japan von Akiba, Mitsuteru, Ota, Yuko, Tsai, Isheng J, Hattori, Tsutomu, Sahashi, Norio, Kikuchi, Taisei

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Inferring synteny between genome assemblies: a systematic evaluation von Liu, Dang, Hunt, Martin, Tsai, Isheng J

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Genetic and Molecular Basis of Drug Resistance and Species-Specific Drug Action in Schistosome Parasites von Valentim, Claudia L. L., Cioli, Donato, Chevalier, Frédéric D., Cao, Xiaohang, Taylor, Alexander B., Holloway, Stephen P., Pica-Mattoccia, Livia, Guidi, Alessandra, Basso, Annalisa, Tsai, Isheng J., Berriman, Matthew, Carvalho-Queiroz, Claudia, Almeida, Marcio, Aguilar, Hector, Frantz, Doug E., Hart, P. John, LoVerde, Philip T., Anderson, Timothy J. C.

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Structure and Diversity of Soil Bacterial Communities in Offshore Islands von Lin, Yu-Te, Lin, Yu-Fei, Tsai, Isheng J., Chang, Ed-Haun, Jien, Shih-Hao, Lin, Yen-Ju, Chiu, Chih-Yu

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Conversion from mouse embryonic to extra-embryonic endoderm stem cells reveals distinct differentiation capacities of pluripotent stem cell states von Cho, Lily T Y, Wamaitha, Sissy E, Tsai, Isheng J, Artus, Jérôme, Sherwood, Richard I, Pedersen, Roger A, Hadjantonakis, Anna-Katerina, Niakan, Kathy K

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Conservation of recombination hotspots in yeast von Tsai, Isheng J, Burt, Austin, Koufopanou, Vassiliki

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Sequential Changes in the Host Gut Microbiota During Infection With the Intestinal Parasitic Nematode Strongyloides venezuelensis von Afrin, Tanzila, Murase, Kazunori, Kounosu, Asuka, Hunt, Vicky L, Bligh, Mark, Maeda, Yasunobu, Hino, Akina, Maruyama, Haruhiko, Tsai, Isheng J, Kikuchi, Taisei

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Comparative and population genomic landscape of Phellinus noxius: A hypervariable fungus causing root rot in trees von Chung, Chia‐Lin, Lee, Tracy J., Akiba, Mitsuteru, Lee, Hsin‐Han, Kuo, Tzu‐Hao, Liu, Dang, Ke, Huei‐Mien, Yokoi, Toshiro, Roa, Marylette B., Lu, Mei‐Yeh J., Chang, Ya‐Yun, Ann, Pao‐Jen, Tsai, Jyh‐Nong, Chen, Chien‐Yu, Tzean, Shean‐Shong, Ota, Yuko, Hattori, Tsutomu, Sahashi, Norio, Liou, Ruey‐Fen, Kikuchi, Taisei, Tsai, Isheng J.

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The rectal mucosal but not fecal microbiota detects subclinical ulcerative colitis von Lin, Yu-Fei, Sung, Chang Mu, Ke, Huei-Mien, Kuo, Chia-Jung, Liu, Wei-an, Tsai, Wen-Sy, Lin, Cheng-Yu, Cheng, Hao-Tsai, Lu, Meiyeh J, Tsai, Isheng. J., Hsieh, Sen-Yung

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Glycoside Hydrolase (GH) 45 and 5 Candidate Cellulases in Aphelenchoides besseyi Isolated from Bird's-Nest Fern von Wu, Guan-Long, Kuo, Tzu-Hao, Tsay, Tung-Tsuan, Tsai, Isheng J, Chen, Peichen J

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Transcriptional and morphological changes in the transition from mycetophagous to phytophagous phase in the plant‐parasitic nematode Bursaphelenchus xylophilus von Tsai, Isheng J., Tanaka, Ryusei, Kanzaki, Natsumi, Akiba, Mitsuteru, Yokoi, Toshiro, Espada, Margarida, Jones, John T., Kikuchi, Taisei

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Germline transgenesis and insertional mutagenesis in Schistosoma mansoni mediated by murine leukemia virus von Rinaldi, Gabriel, Eckert, Sabine E, Tsai, Isheng J, Suttiprapa, Sutas, Kines, Kristine J, Tort, José F, Mann, Victoria H, Turner, Daniel J, Berriman, Matthew, Brindley, Paul J

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genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode von Cotton, James A, Lilley, Catherine J, Jones, Laura M, Kikuchi, Taisei, Reid, Adam J, Thorpe, Peter, Tsai, Isheng J, Beasley, Helen, Blok, Vivian, Cock, Peter J A, den Akker, Sebastian Eves-van, Holroyd, Nancy, Hunt, Martin, Mantelin, Sophie, Naghra, Hardeep, Pain, Arnab, Palomares-Rius, Juan E, Zarowiecki, Magdalena, Berriman, Matthew, Jones, John T, Urwin, Peter E

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HIV-1 Integrates Widely throughout the Genome of the Human Blood Fluke Schistosoma mansoni von Suttiprapa, Sutas, Rinaldi, Gabriel, Tsai, Isheng J, Mann, Victoria H, Dubrovsky, Larisa, Yan, Hong-Bin, Holroyd, Nancy, Huckvale, Thomas, Durrant, Caroline, Protasio, Anna V, Pushkarsky, Tatiana, Iordanskiy, Sergey, Berriman, Matthew, Bukrinsky, Michael I, Brindley, Paul J

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An expressed, endogenous Nodavirus-like element captured by a retrotransposon in the genome of the plant parasitic nematode Bursaphelenchus xylophilus von Cotton, James A., Steinbiss, Sascha, Yokoi, Toshiro, Tsai, Isheng J., Kikuchi, Taisei

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