Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool von Puchades, Maja A, Csucs, Gergely, Ledergerber, Debora, Leergaard, Trygve B, Bjaalie, Jan G

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Waxholm Space atlas of the Sprague Dawley rat brain von Papp, Eszter A., Leergaard, Trygve B., Calabrese, Evan, Johnson, G. Allan, Bjaalie, Jan G.

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The topography of corticopontine projections is controlled by postmitotic expression of the area-mapping gene Nr2f1 von Tocco, Chiara, Øvsthus, Martin, Bjaalie, Jan G, Leergaard, Trygve B, Studer, Michèle

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Quantitative histological validation of diffusion MRI fiber orientation distributions in the rat brain von Leergaard, Trygve B, White, Nathan S, de Crespigny, Alex, Bolstad, Ingeborg, D'Arceuil, Helen, Bjaalie, Jan G, Dale, Anders M

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Waxholm Space atlas of the rat brain hippocampal region: Three-dimensional delineations based on magnetic resonance and diffusion tensor imaging von Kjonigsen, Lisa J., Lillehaug, Sveinung, Bjaalie, Jan G., Witter, Menno P., Leergaard, Trygve B.

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Targeted deletion of the aquaglyceroporin AQP9 is protective in a mouse model of Parkinson's disease von Stahl, Katja, Rahmani, Soulmaz, Prydz, Agnete, Skauli, Nadia, MacAulay, Nanna, Mylonakou, Maria N, Torp, Reidun, Skare, Øivind, Berg, Torill, Leergaard, Trygve B, Paulsen, Ragnhild E, Ottersen, Ole P, Amiry-Moghaddam, Mahmood

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Patterns of Invasive Growth in Malignant Gliomas—The Hippocampus Emerges as an Invasion-Spared Brain Region von Mughal, Awais A., Zhang, Lili, Fayzullin, Artem, Server, Andres, Li, Yuping, Wu, Yingxi, Glass, Rainer, Meling, Torstein, Langmoen, Iver A., Leergaard, Trygve B., Vik-Mo, Einar O.

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A three-plane architectonic atlas of the rat hippocampal region von Boccara, Charlotte N., Kjonigsen, Lisa J., Hammer, Ingvild M., Bjaalie, Jan G., Leergaard, Trygve B., Witter, Menno P.

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Atlas-based data integration for mapping the connections and architecture of the brain von Leergaard, Trygve B., Bjaalie, Jan G.

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The efferent connections of the orbitofrontal, posterior parietal, and insular cortex of the rat brain von Reiten, Ingrid, Olsen, Grethe M., Bjaalie, Jan G., Witter, Menno P., Leergaard, Trygve B.

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Densities and numbers of calbindin and parvalbumin positive neurons across the rat and mouse brain von Bjerke, Ingvild E., Yates, Sharon C., Laja, Arthur, Witter, Menno P., Puchades, Maja A., Bjaalie, Jan G., Leergaard, Trygve B.

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Spatially integrated cortico-subcortical tracing data for analyses of rodent brain topographical organization von Øvsthus, Martin, van Swieten, Maaike M. H., Puchades, Maja A., Tocco, Chiara, Studer, Michèle, Bjaalie, Jan G., Leergaard, Trygve B.

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Three-Dimensional Histology Volume Reconstruction of Axonal Tract Tracing Data: Exploring Topographical Organization in Subcortical Projections from Rat Barrel Cortex von Zakiewicz, Izabela M, Majka, Piotr, Wójcik, Daniel K, Bjaalie, Jan G, Leergaard, Trygve B

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A neuroscientist's guide to using murine brain atlases for efficient analysis and transparent reporting von Kleven, Heidi, Reiten, Ingrid, Blixhavn, Camilla H, Schlegel, Ulrike, Øvsthus, Martin, Papp, Eszter A, Puchades, Maja A, Bjaalie, Jan G, Leergaard, Trygve B, Bjerke, Ingvild E

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AtOM, an ontology model to standardize use of brain atlases in tools, workflows, and data infrastructures von Kleven, Heidi, Gillespie, Thomas H., Zehl, Lyuba, Dickscheid, Timo, Bjaalie, Jan G., Martone, Maryann E., Leergaard, Trygve B.

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Brain-wide map of efferent projections from rat barrel cortex von Zakiewicz, Izabela M, Bjaalie, Jan G, Leergaard, Trygve B

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The Locare workflow: representing neuroscience data locations as geometric objects in 3D brain atlases von Blixhavn, Camilla H, Reiten, Ingrid, Kleven, Heidi, Øvsthus, Martin, Yates, Sharon C, Schlegel, Ulrike, Puchades, Maja A, Schmid, Oliver, Bjaalie, Jan G, Bjerke, Ingvild E, Leergaard, Trygve B

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Mapping the connectome: multi-level analysis of brain connectivity von Leergaard, Trygve B, Hilgetag, Claus C, Sporns, Olaf

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Elevated mRNA-levels of gonadotropin-releasing hormone and its receptor in plaque-bearing Alzheimer's disease transgenic mice von Nuruddin, Syed, Syverstad, Gry Helen Enger, Lillehaug, Sveinung, Leergaard, Trygve B, Nilsson, Lars N G, Ropstad, Erik, Krogenæs, Anette, Haraldsen, Ira Ronit Hebold, Torp, Reidun

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Workflow and atlas system for brain-wide mapping of axonal connectivity in rat von Zakiewicz, Izabela M, van Dongen, Yvette C, Leergaard, Trygve B, Bjaalie, Jan G

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