The evolutionary and transmission dynamics of HIV-1 CRF08_BC von Li, Xingguang, Trovão, Nídia S

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When Pigs Fly: Pandemic influenza enters the 21st century von Trovao, Nidia S., Nelson, Martha

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The emergence and circulation of human immunodeficiency virus (HIV)-1 subtype C von Li, Xingguang, Tamim, Sana, Trovão, Nídia S

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Accelerating Bayesian inference of dependency between mixed-type biological traits von Zhang, Zhenyu, Nishimura, Akihiko, Trovão, Nídia S, Cherry, Joshua L, Holbrook, Andrew J, Ji, Xiang, Lemey, Philippe, Suchard, Marc A

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Ecological divergence of wild birds drives avian influenza spillover and global spread von Hill, Nichola J, Bishop, Mary Anne, Trovão, Nídia S, Ineson, Katherine M, Schaefer, Anne L, Puryear, Wendy B, Zhou, Katherine, Foss, Alexa D, Clark, Daniel E, MacKenzie, Kenneth G, Gass, Jr, Jonathon D, Borkenhagen, Laura K, Hall, Jeffrey S, Runstadler, Jonathan A

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Insect-specific viruses in the Parvoviridae family: Genetic lineage characterization and spatiotemporal dynamics of the recently established Brevihamaparvovirus genus von Morais, Paulo, Trovão, Nídia S., Abecasis, Ana B., Parreira, Ricardo

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Readdressing the genetic diversity and taxonomy of the Mesoniviridae family, as well as its relationships with other nidoviruses and putative mesonivirus-like viral sequences von Morais, Paulo, Trovão, Nídia S., Abecasis, Ana B., Parreira, Ricardo

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Genetic lineage characterization and spatiotemporal dynamics of classical insect-specific flaviviruses: outcomes and limitations von Morais, Paulo, Trovão, Nídia S., Abecasis, Ana B., Parreira, Ricardo

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The emergence and transmission dynamics of HIV-1 CRF07_BC in Mainland China von Li, Xingguang, Li, Yanping, Liu, Haizhou, Trovão, Nídia S, Foley, Brian T

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On the importance of negative controls in viral landscape phylogeography von Dellicour, Simon, Vrancken, Bram, Trovão, Nídia S, Fargette, Denis, Lemey, Philippe

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Optimizing ancestral trait reconstruction of large HIV Subtype C datasets through multiple-trait subsampling von Li, Xingguang, Trovão, Nídia S, Wertheim, Joel O, Baele, Guy, de Bernardi Schneider, Adriano

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Genomic diversity of SARS-CoV-2 during early introduction into the Baltimore-Washington metropolitan area von Thielen, Peter M., Wohl, Shirlee, Mehoke, Thomas, Ramakrishnan, Srividya, Kirsche, Melanie, Falade-Nwulia, Oluwaseun, Trovao, Nidia S., Ernlund, Amanda, Howser, Craig, Sadowski, Norah, Morris, C. Paul, Hopkins, Mark, Schwartz, Matthew, Fan, Yunfan, Gniazdowski, Victoria, Lessler, Justin, Sauer, Lauren, Schatz, Michael C., Evans, Jared D., Ray, Stuart C., Timp, Winston, Mostafa, Heba H.

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SARS-CoV-2 antibody prevalence in a pediatric cohort of unvaccinated children in Mérida, Yucatán, México von Ayora-Talavera, Guadalupe, Kirstein, Oscar D, Puerta-Guardo, Henry, Barrera-Fuentes, Gloria A, Ortegòn-Abud, Desiree, Che-Mendoza, Azael, Parra, Manuel, Peña-Miranda, Fernando, Culquichicon, Carlos, Pavia-Ruz, Norma, Beheshti, Afshin, Trovão, Nídia S, Granja-Pérez, Pilar, Manrique-Saide, Pablo, Vazquez-Prokopec, Gonzalo M, Earnest, James T

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Comparative evolution of influenza A virus H1 and H3 head and stalk domains across host species von Trovão, Nidia S, Khan, Sairah M, Lemey, Philippe, Nelson, Martha I, Cherry, Joshua L

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Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable von Mavian, Carla, Pond, Sergei Kosakovsky, Marini, Simone, Magalis, Brittany Rife, Vandamme, Anne-Mieke, Dellicour, Simon, Scarpino, Samuel V., Houldcroft, Charlotte, Villabona-Arenas, Julian, Paisie, Taylor K., Trovão, Nídia S., Boucher, Christina, Zhang, Yun, Scheuermann, Richard H., Gascuel, Olivier, Lam, Tommy Tsan-Yuk, Suchard, Marc A., Abecasis, Ana, Wilkinson, Eduan, de Oliveira, Tulio, Bento, Ana I., Schmidt, Heiko A., Martin, Darren, Hadfield, James, Faria, Nuno, Grubaugh, Nathan D., Neher, Richard A., Baele, Guy, Lemey, Philippe, Stadler, Tanja, Albert, Jan, Crandall, Keith A., Leitner, Thomas, Stamatakis, Alexandros, Prosperi, Mattia, Salemi, Marco

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Origins of the 2009 H1N1 influenza pandemic in swine in Mexico von Mena, Ignacio, Nelson, Martha I, Quezada-Monroy, Francisco, Dutta, Jayeeta, Cortes-Fernández, Refugio, Lara-Puente, J Horacio, Castro-Peralta, Felipa, Cunha, Luis F, Trovão, Nídia S, Lozano-Dubernard, Bernardo, Rambaut, Andrew, van Bakel, Harm, García-Sastre, Adolfo

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A comprehensive SARS-CoV-2 and COVID-19 review, Part 1: Intracellular overdrive for SARS-CoV-2 infection von Jamison, Jr, David A, Anand Narayanan, S, Trovão, Nídia S, Guarnieri, Joseph W, Topper, Michael J, Moraes-Vieira, Pedro M, Zaksas, Viktorija, Singh, Keshav K, Wurtele, Eve Syrkin, Beheshti, Afshin

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Human-Origin Influenza A(H3N2) Reassortant Viruses in Swine, Southeast Mexico von Nelson, Martha I, Souza, Carine K, Trovão, Nídia S, Diaz, Andres, Mena, Ignacio, Rovira, Albert, Vincent, Amy L, Torremorell, Montserrat, Marthaler, Douglas, Culhane, Marie R

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Human Influenza A Virus Hemagglutinin Glycan Evolution Follows a Temporal Pattern to a Glycan Limit von Altman, Meghan O, Angel, Matthew, Košík, Ivan, Trovão, Nídia S, Zost, Seth J, Gibbs, James S, Casalino, Lorenzo, Amaro, Rommie E, Hensley, Scott E, Nelson, Martha I, Yewdell, Jonathan W

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Sequential viral introductions and spread of BA.1 across Pakistan provinces during the Omicron wave von Bukhari, Ali Raza, Ashraf, Javaria, Kanji, Akbar, Rahman, Yusra Abdul, Trovão, Nídia S, Thielen, Peter M, Yameen, Maliha, Kanwar, Samiah, Khan, Waqasuddin, Kabir, Furqan, Nisar, Muhammad Imran, Merritt, Brian, Hasan, Rumina, Spiro, David, Rasmussen, Zeba, Aamir, Uzma Bashir, Hasan, Zahra

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