SeSAMe: reducing artifactual detection of DNA methylation by Infinium BeadChips in genomic deletions von Zhou, Wanding, Triche, Timothy J, Laird, Peter W, Shen, Hui

Volltext

Low-level processing of Illumina Infinium DNA Methylation BeadArrays von Triche, Jr, Timothy J, Weisenberger, Daniel J, Van Den Berg, David, Laird, Peter W, Siegmund, Kimberly D

Volltext

Preprocessing, normalization and integration of the Illumina HumanMethylationEPIC array with minfi von Fortin, Jean-Philippe, Triche, Jr, Timothy J, Hansen, Kasper D

Volltext

BISCUIT: an efficient, standards-compliant tool suite for simultaneous genetic and epigenetic inference in bulk and single-cell studies von Zhou, Wanding, Johnson, Benjamin K, Morrison, Jacob, Beddows, Ian, Eapen, James, Katsman, Efrat, Semwal, Ayush, Habib, Walid Abi, Heo, Lyong, Laird, Peter W, Berman, Benjamin P, Triche, Timothy J, Shen, Hui

Volltext

Author Correction: CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes von Unterman, Irene, Avrahami, Dana, Katsman, Efrat, Triche, Jr, Timothy J, Glaser, Benjamin, Berman, Benjamin P

Volltext

Persistence of SARS CoV-2 S1 Protein in CD16+ Monocytes in Post-Acute Sequelae of COVID-19 (PASC) up to 15 Months Post-Infection von Patterson, Bruce K, Francisco, Edgar B, Yogendra, Ram, Long, Emily, Pise, Amruta, Rodrigues, Hallison, Hall, Eric, Herrera, Monica, Parikh, Purvi, Guevara-Coto, Jose, Triche, Timothy J, Scott, Paul, Hekmati, Saboor, Maglinte, Dennis, Chang, Xaiolan, Mora-Rodríguez, Rodrigo A, Mora, Javier

Volltext

Discovery and validation of a prostate cancer genomic classifier that predicts early metastasis following radical prostatectomy von Erho, Nicholas, Crisan, Anamaria, Vergara, Ismael A, Mitra, Anirban P, Ghadessi, Mercedeh, Buerki, Christine, Bergstralh, Eric J, Kollmeyer, Thomas, Fink, Stephanie, Haddad, Zaid, Zimmermann, Benedikt, Sierocinski, Thomas, Ballman, Karla V, Triche, Timothy J, Black, Peter C, Karnes, R Jeffrey, Klee, George, Davicioni, Elai, Jenkins, Robert B

Volltext

CelFiE-ISH: a probabilistic model for multi-cell type deconvolution from single-molecule DNA methylation haplotypes von Unterman, Irene, Avrahami, Dana, Katsman, Efrat, Tim, Jr, Triche, Glaser, Benjamin, Berman, Benjamin P

Volltext

Long Noncoding RNA Expression Independently Predicts Outcome in Pediatric Acute Myeloid Leukemia von Farrar, Jason E, Smith, Jenny L, Othus, Megan, Huang, Benjamin J, Wang, Yi-Cheng, Ries, Rhonda, Hylkema, Tiffany, Pogosova-Agadjanyan, Era L, Challa, Sneha, Leonti, Amanda, Shaw, Timothy I, Triche, Jr, Timothy J, Gamis, Alan S, Aplenc, Richard, Kolb, E Anders, Ma, Xiaotu, Stirewalt, Derek L, Alonzo, Todd A, Meshinchi, Soheil

Volltext

GLI3 repressor determines Hedgehog pathway activation and is required for response to SMO antagonist glasdegib in AML von Chaudhry, Parvesh, Singh, Mohan, Triche, Timothy J., Guzman, Monica, Merchant, Akil A.

Volltext

The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex von Prensner, John R, Iyer, Matthew K, Sahu, Anirban, Asangani, Irfan A, Cao, Qi, Patel, Lalit, Vergara, Ismael A, Davicioni, Elai, Erho, Nicholas, Ghadessi, Mercedeh, Jenkins, Robert B, Triche, Timothy J, Malik, Rohit, Bedenis, Rachel, McGregor, Natalie, Ma, Teng, Chen, Wei, Han, Sumin, Jing, Xiaojun, Cao, Xuhong, Wang, Xiaoju, Chandler, Benjamin, Yan, Wei, Siddiqui, Javed, Kunju, Lakshmi P, Dhanasekaran, Saravana M, Pienta, Kenneth J, Feng, Felix Y, Chinnaiyan, Arul M

Volltext

Dysregulated heparan sulfate proteoglycan metabolism promotes Ewing sarcoma tumor growth von Vasileva, Elena, Warren, Mikako, Triche, Timothy J, Amatruda, James F

Volltext

A B-cell developmental gene regulatory network is activated in infant AML von Bolouri, Hamid, Ries, Rhonda, Pardo, Laura, Hylkema, Tiffany, Zhou, Wanding, Smith, Jenny L., Leonti, Amanda, Loken, Michael, Farrar, Jason E., Triche, Timothy J., Meshinchi, Soheil

Volltext

EGFR-dependent endocytosis of Wnt9a and Fzd9b promotes β-catenin signaling during hematopoietic stem cell development in zebrafish von Nguyen, Nicole, Carpenter, Kelsey A, Ensing, Jessica, Gilliland, Carla, Rudisel, Emma J, Mu, Emily M, Thurlow, Kate E, Triche, Jr, Timothy J, Grainger, Stephanie

Volltext

Ten quick tips for deep learning in biology von Lee, Benjamin D, Gitter, Anthony, Greene, Casey S, Raschka, Sebastian, Maguire, Finlay, Titus, Alexander J, Kessler, Michael D, Lee, Alexandra J, Chevrette, Marc G, Stewart, Paul Allen, Britto-Borges, Thiago, Cofer, Evan M, Yu, Kun-Hsing, Carmona, Juan Jose, Fertig, Elana J, Kalinin, Alexandr A, Signal, Brandon, Lengerich, Benjamin J, Triche, Jr, Timothy J, Boca, Simina M

Volltext

Comprehensive Transcriptome Profiling of Cryptic CBFA2T3-GLIS2 Fusion-Positive AML Defines Novel Therapeutic Options: A COG and TARGET Pediatric AML Study von Smith, Jenny L., Ries, Rhonda E., Hylkema, Tiffany, Alonzo, Todd A., Gerbing, Robert B., Santaguida, Marianne T., Brodersen, Lisa Eidenschink, Pardo, Laura, Cummings, Carrie L., Loeb, Keith R., Le, Quy, Imren, Suzan, Leonti, Amanda R., Gamis, Alan S., Aplenc, Richard, Kolb, E. Anders, Farrar, Jason E., Triche, Timothy J., Nguyen, Cu, Meerzaman, Daoud, Loken, Michael R., Oehler, Vivian G., Bolouri, Hamid, Meshinchi, Soheil

Volltext

Translational Activation of Snail1 and Other Developmentally Regulated Transcription Factors by YB-1 Promotes an Epithelial-Mesenchymal Transition von Evdokimova, Valentina, Tognon, Cristina, Ng, Tony, Ruzanov, Peter, Melnyk, Natalya, Fink, Dieter, Sorokin, Alexey, Ovchinnikov, Lev P., Davicioni, Elai, Triche, Timothy J., Sorensen, Poul H.B.

Volltext

Emerging variants of concern in SARS-CoV-2 membrane protein: a highly conserved target with potential pathological and therapeutic implications von Shen, Lishuang, Bard, Jennifer Dien, Triche, Timothy J., Judkins, Alexander R., Biegel, Jaclyn A., Gai, Xiaowu

Volltext

Sequence-specific knockdown of EWS-FLI1 by targeted, nonviral delivery of small interfering RNA inhibits tumor growth in a murine model of metastatic Ewing's sarcoma von HU-LIESKOVAN, Siwen, HEIDEL, Jeremy D, BARTLETT, Derek W, DAVIS, Mark E, TRICHE, Timothy J

Volltext

A central role for long non-coding RNA in cancer von Mitra, Sheetal A, Mitra, Anirban P, Triche, Timothy J

Volltext