Structure and functional reselection of the Mango-III fluorogenic RNA aptamer von Trachman, Robert J., Autour, Alexis, Jeng, Sunny C. Y., Abdolahzadeh, Amir, Andreoni, Alessio, Cojocaru, Razvan, Garipov, Ramil, Dolgosheina, Elena V., Knutson, Jay R., Ryckelynck, Michael, Unrau, Peter J., Ferré-D’Amaré, Adrian R.

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Crystal Structures of the Mango-II RNA Aptamer Reveal Heterogeneous Fluorophore Binding and Guide Engineering of Variants with Improved Selectivity and Brightness von Trachman, Robert J, Abdolahzadeh, Amir, Andreoni, Alessio, Cojocaru, Razvan, Knutson, Jay R, Ryckelynck, Michael, Unrau, Peter J, Ferré-D’Amaré, Adrian R

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The bacterial yjdF riboswitch regulates translation through its tRNA-like fold von Trachman, Robert J., Passalacqua, Luiz F.M., Ferré-D’Amaré, Adrian R.

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Structure-Guided Engineering of the Homodimeric Mango-IV Fluorescence Turn-on Aptamer Yields an RNA FRET Pair von Trachman, Robert J., Cojocaru, Razvan, Wu, Di, Piszczek, Grzegorz, Ryckelynck, Michael, Unrau, Peter J., Ferré-D’Amaré, Adrian R.

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Structural Principles of Fluorescent RNA Aptamers von Trachman, Robert J., Truong, Lynda, Ferré-D'Amaré, Adrian R.

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Structural basis for high-affinity fluorophore binding and activation by RNA Mango von Trachman, Robert J, Demeshkina, Natalia A, Lau, Matthew W L, Panchapakesan, Shanker Shyam S, Jeng, Sunny C Y, Unrau, Peter J, Ferré-D'Amaré, Adrian R

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Divalent ion competition reveals reorganization of an RNA ion atmosphere upon folding von Trachman, 3rd, Robert J, Draper, David E

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Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET von Jeng, Sunny C Y, Trachman, 3rd, Robert J, Weissenboeck, Florian, Truong, Lynda, Link, Katie A, Jepsen, Mette D E, Knutson, Jay R, Andersen, Ebbe S, Ferré-D'Amaré, Adrian R, Unrau, Peter J

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An uncommon [K + (Mg 2+ ) 2 ] metal ion triad imparts stability and selectivity to the Guanidine-I riboswitch von Trachman, 3rd, Robert J, Ferré-D'Amaré, Adrian R

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Characterizing Fluorescence Properties of Turn-on RNA Aptamers von Trachman, Robert J., Link, Katie A., Knutson, Jay R., Ferré-D’Amaré, Adrian R.

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Tracking RNA with light: selection, structure, and design of fluorescence turn-on RNA aptamers von Trachman, Robert J, Ferré-D'Amaré, Adrian R

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RNA-Puzzles Round V: blind predictions of 23 RNA structures von Bu, Fan, Adam, Yagoub, Adamiak, Ryszard W, Antczak, Maciej, de Aquino, Belisa Rebeca H, Badepally, Nagendar Goud, Batey, Robert T, Baulin, Eugene F, Boinski, Pawel, Boniecki, Michal J, Bujnicki, Janusz M, Carpenter, Kristy A, Chacon, Jose, Chen, Shi-Jie, Chiu, Wah, Cordero, Pablo, Das, Naba Krishna, Das, Rhiju, Dawson, Wayne K, DiMaio, Frank, Ding, Feng, Dock-Bregeon, Anne-Catherine, Dokholyan, Nikolay V, Dror, Ron O, Dunin-Horkawicz, Stanisław, Eismann, Stephan, Ennifar, Eric, Esmaeeli, Reza, Farsani, Masoud Amiri, Ferré-D'Amaré, Adrian R, Geniesse, Caleb, Ghanim, George E, Guzman, Horacio V, Hood, Iris V, Huang, Lin, Jain, Dharm Skandh, Jaryani, Farhang, Jin, Lei, Joshi, Astha, Karelina, Masha, Kieft, Jeffrey S, Kladwang, Wipapat, Kmiecik, Sebastian, Koirala, Deepak, Kollmann, Markus, Kretsch, Rachael C, Kurciński, Mateusz, Li, Jun, Li, Shuang, Magnus, Marcin, Masquida, BenoÎt, Moafinejad, S Naeim, Mondal, Arup, Mukherjee, Sunandan, Nguyen, Thi Hoang Duong, Nikolaev, Grigory, Nithin, Chandran, Nye, Grace, Pandaranadar Jeyeram, Iswarya P N, Perez, Alberto, Pham, Phillip, Piccirilli, Joseph A, Pilla, Smita Priyadarshini, Pluta, Radosław, Poblete, Simón, Ponce-Salvatierra, Almudena, Popenda, Mariusz, Popenda, Lukasz, Pucci, Fabrizio, Rangan, Ramya, Ray, Angana, Ren, Aiming, Sarzynska, Joanna, Sha, Congzhou Mike, Stefaniak, Filip, Su, Zhaoming, Suddala, Krishna C, Szachniuk, Marta, Townshend, Raphael, Trachman, 3rd, Robert J, Wang, Jian, Wang, Wenkai, Watkins, Andrew, Wirecki, Tomasz K, Xiao, Yi, Xiong, Peng, Xiong, Yiduo, Yang, Jianyi, Yesselman, Joseph David, Zhang, Jinwei, Zhang, Yi, Zhang, Zhenzhen, Zhou, Yuanzhe, Zok, Tomasz, Zhang, Dong, Zhang, Sicheng, Żyła, Adriana, Westhof, Eric, Miao, Zhichao

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Comparison of Interactions of Diamine and Mg2+ with RNA Tertiary Structures: Similar versus Differential Effects on the Stabilities of Diverse RNA Folds von Trachman, Robert J, Draper, David E

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A divalent cation-dependent variant of the glmS ribozyme with stringent Ca2+ selectivity co-opts a preexisting nonspecific metal ion-binding site von Lau, Matthew W L, Trachman, Robert J, Ferré-D'Amaré, Adrian R

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Co‐crystal structure of the iMango‐III fluorescent RNA aptamer using an X‐ray free‐electron laser von Trachman, Robert J., Stagno, Jason R., Conrad, Chelsie, Jones, Christopher P., Fischer, Pontus, Meents, Alke, Wang, Yun-Xing, Ferré-D'Amaré, Adrian R.

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A divalent cation-dependent variant of the glmS ribozyme with stringent Ca 2+ selectivity co-opts a preexisting nonspecific metal ion-binding site von Lau, Matthew W L, Trachman, 3rd, Robert J, Ferré-D'Amaré, Adrian R

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Co‐crystal structure of the Fusobacterium ulcerans ZTP riboswitch using an X‐ray free‐electron laser von Jones, Christopher, Tran, Brandon, Conrad, Chelsie, Stagno, Jason, Trachman, Robert, Fischer, Pontus, Meents, Alke, Ferré-D'Amaré, Adrian

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Structural principles of RNA based fluorescent protein analogues von Trachman, Robert J., Truong, Lynda, Ferré-D’Amaré, Adrian R.

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A divalent cation-dependent variant of the glmS ribozyme with stringent Ca2+ selectivity co-opts a preexisting nonspecific metal ion-binding site von Lau, Matthew W.L., Trachman, Robert J., Ferré-D'Amaré, Adrian R.

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Comparison of Interactions of Diamine and Mg 2+ with RNA Tertiary Structures: Similar versus Differential Effects on the Stabilities of Diverse RNA Folds von Trachman, Robert J., Draper, David E.

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