MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads von Uliano-Silva, Marcela, Ferreira, João Gabriel R N, Krasheninnikova, Ksenia, Formenti, Giulio, Abueg, Linelle, Torrance, James, Myers, Eugene W, Durbin, Richard, Blaxter, Mark, McCarthy, Shane A

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Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly von Schneider, Valerie A, Graves-Lindsay, Tina, Howe, Kerstin, Bouk, Nathan, Chen, Hsiu-Chuan, Kitts, Paul A, Murphy, Terence D, Pruitt, Kim D, Thibaud-Nissen, Françoise, Albracht, Derek, Fulton, Robert S, Kremitzki, Milinn, Magrini, Vincent, Markovic, Chris, McGrath, Sean, Steinberg, Karyn Meltz, Auger, Kate, Chow, William, Collins, Joanna, Harden, Glenn, Hubbard, Timothy, Pelan, Sarah, Simpson, Jared T, Threadgold, Glen, Torrance, James, Wood, Jonathan M, Clarke, Laura, Koren, Sergey, Boitano, Matthew, Peluso, Paul, Li, Heng, Chin, Chen-Shan, Phillippy, Adam M, Durbin, Richard, Wilson, Richard K, Flicek, Paul, Eichler, Evan E, Church, Deanna M

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Genomics of cold adaptations in the Antarctic notothenioid fish radiation von Bista, Iliana, Wood, Jonathan M. D., Desvignes, Thomas, McCarthy, Shane A., Matschiner, Michael, Ning, Zemin, Tracey, Alan, Torrance, James, Sims, Ying, Chow, William, Smith, Michelle, Oliver, Karen, Haggerty, Leanne, Salzburger, Walter, Postlethwait, John H., Howe, Kerstin, Clark, Melody S., William Detrich, H., Christina Cheng, C.-H., Miska, Eric A., Durbin, Richard

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Modernizing reference genome assemblies von Church, Deanna M, Schneider, Valerie A, Graves, Tina, Auger, Katherine, Cunningham, Fiona, Bouk, Nathan, Chen, Hsiu-Chuan, Agarwala, Richa, McLaren, William M, Ritchie, Graham R S, Albracht, Derek, Kremitzki, Milinn, Rock, Susan, Kotkiewicz, Holland, Kremitzki, Colin, Wollam, Aye, Trani, Lee, Fulton, Lucinda, Fulton, Robert, Matthews, Lucy, Whitehead, Siobhan, Chow, Will, Torrance, James, Dunn, Matthew, Harden, Glenn, Threadgold, Glen, Wood, Jonathan, Collins, Joanna, Heath, Paul, Griffiths, Guy, Pelan, Sarah, Grafham, Darren, Eichler, Evan E, Weinstock, George, Mardis, Elaine R, Wilson, Richard K, Howe, Kerstin, Flicek, Paul, Hubbard, Tim

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The gene-rich genome of the scallop Pecten maximus von Kenny, Nathan J, McCarthy, Shane A, Dudchenko, Olga, James, Katherine, Betteridge, Emma, Corton, Craig, Dolucan, Jale, Mead, Dan, Oliver, Karen, Omer, Arina D, Pelan, Sarah, Ryan, Yan, Sims, Ying, Skelton, Jason, Smith, Michelle, Torrance, James, Weisz, David, Wipat, Anil, Aiden, Erez L, Howe, Kerstin, Williams, Suzanne T

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A high-quality, chromosome-level genome assembly of the Black Soldier Fly (Hermetia illucens L.) von Generalovic, Tomas N, McCarthy, Shane A, Warren, Ian A, Wood, Jonathan M D, Torrance, James, Sims, Ying, Quail, Michael, Howe, Kerstin, Pipan, Miha, Durbin, Richard, Jiggins, Chris D

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A chromosome-level reference genome and pangenome for barn swallow population genomics von Secomandi, Simona, Gallo, Guido R., Sozzoni, Marcella, Iannucci, Alessio, Galati, Elena, Abueg, Linelle, Balacco, Jennifer, Caprioli, Manuela, Chow, William, Ciofi, Claudio, Collins, Joanna, Fedrigo, Olivier, Ferretti, Luca, Fungtammasan, Arkarachai, Haase, Bettina, Howe, Kerstin, Kwak, Woori, Lombardo, Gianluca, Masterson, Patrick, Messina, Graziella, Møller, Anders P., Mountcastle, Jacquelyn, Mousseau, Timothy A., Ferrer Obiol, Joan, Olivieri, Anna, Rhie, Arang, Rubolini, Diego, Saclier, Marielle, Stanyon, Roscoe, Stucki, David, Thibaud-Nissen, Françoise, Torrance, James, Torroni, Antonio, Weber, Kristina, Ambrosini, Roberto, Bonisoli-Alquati, Andrea, Jarvis, Erich D., Gianfranceschi, Luca, Formenti, Giulio

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles maculipalpis , Giles, 1902 von Rahola, Nil, Ayala, Diego, Bouafou, Lemonde B A, Makanga, Boris K, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano-Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N

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Chromosomal reference genome sequences for the malaria mosquito, Anopheles coustani , Laveran, 1900 von Bouafou, Lemonde B A, Ayala, Diego, Makanga, Boris K, Rahola, Nil, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano-Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles marshallii , Theobald, 1903 von Makanga, Boris K, Ayala, Diego, Rahola, Nil, Bouafou, Lemonde B A, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano-Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles moucheti , Evans, 1925 von Nsango, Sandrine N, Agbor, Jean-Pierre, Ayala, Diego, Johnson, Harriet F, Heaton, Haynes, Wagah, Martin G, Collins, Joanna C, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano Da Silva, Marcela, Wood, Jonathan M D, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara

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Using a Library of Structural Templates to Recognise Catalytic Sites and Explore their Evolution in Homologous Families von Torrance, James W., Bartlett, Gail J., Porter, Craig T., Thornton, Janet M.

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caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifacts von Moffitt, Richard A, Yin-Goen, Qiqin, Stokes, Todd H, Parry, R Mitchell, Torrance, James H, Phan, John H, Young, Andrew N, Wang, May D

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Evolution of binding sites for zinc and calcium ions playing structural roles von Torrance, James W., MacArthur, Malcolm W., Thornton, Janet M.

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The complete genome sequence of Eimeria tenella (Tyzzer 1929), a common gut parasite of chickens von Aunin, Eerik, Böhme, Ulrike, Blake, Damer, Dove, Alexander, Smith, Michelle, Corton, Craig, Oliver, Karen, Betteridge, Emma, Quail, Michael A, McCarthy, Shane A, Wood, Jonathan, Tracey, Alan, Torrance, James, Sims, Ying, Howe, Kerstin, Challis, Richard, Berriman, Matthew, Reid, Adam

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The genome sequence of the Norway rat, Rattus norvegicus Berkenhout 1769 von Howe, Kerstin, Dwinell, Melinda, Shimoyama, Mary, Corton, Craig, Betteridge, Emma, Dove, Alexander, Quail, Michael A, Smith, Michelle, Saba, Laura, Williams, Robert W, Chen, Hao, Kwitek, Anne E, McCarthy, Shane A, Uliano-Silva, Marcela, Chow, William, Tracey, Alan, Torrance, James, Sims, Ying, Challis, Richard, Threlfall, Jonathan, Blaxter, Mark

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The genome sequence of the brown trout, Salmo trutta Linnaeus 1758 von Hansen, Tom, Fjelldal, Per Gunnar, Lien, Sigbjørn, Smith, Michelle, Corton, Craig, Oliver, Karen, Skelton, Jason, Betteridge, Emma, Doulcan, Jale, Fedrigo, Olivier, Mountcastle, Jacquelyn, Jarvis, Erich, McCarthy, Shane A., Chow, William, Howe, Kerstin, Torrance, James, Wood, Jonathan, Sims, Ying, Haggerty, Leanne, Challis, Richard, Threlfall, Jonathan, Mead, Daniel, Durbin, Richard, Blaxter, Mark

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A chromosomal reference genome sequence for the malaria mosquito, Anopheles gambiae , Giles, 1902, Ifakara strain von Habtewold, Tibebu, Wagah, Martin, Tambwe, Mgeni Mohamed, Moore, Sarah, Windbichler, Nikolai, Christophides, George, Johnson, Harriet, Heaton, Haynes, Collins, Joanna, Krasheninnikova, Ksenia, Pelan, Sarah E, Pointon, Damon-Lee B, Sims, Ying, Torrance, James W, Tracey, Alan, Uliano Da Silva, Marcela, Wood, Jonathan Md, von Wyschetzki, Katharina, McCarthy, Shane A, Neafsey, Daniel E, Makunin, Alex, Lawniczak, Mara K N, Lawniczak, Mara

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The genome sequence of the channel bull blenny, Cottoperca gobio (Günther, 1861) von Bista, Iliana, McCarthy, Shane A, Wood, Jonathan, Ning, Zemin, Detrich Iii, H William, Desvignes, Thomas, Postlethwait, John, Chow, William, Howe, Kerstin, Torrance, James, Smith, Michelle, Oliver, Karen, Miska, Eric A, Durbin, Richard

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The genome sequence of the malaria mosquito, Anopheles funestus, Giles, 1900 von Ayala, Diego, Akone-Ella, Ousman, Kengne, Pierre, Johnson, Harriet, Heaton, Haynes, Collins, Joanna, Krasheninnikova, Ksenia, Pelan, Sarah, Pointon, Damon-Lee, Sims, Ying, Torrance, James, Tracey, Alan, Uliano-Silva, Marcela, von Wyschetzki, Katharina, Wood, Jonathan, McCarthy, Shane, Neafsey, Daniel, Makunin, Alex, Lawniczak, Mara

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