Toward an Optimized Workflow for Middle-Down Proteomics von Cristobal, Alba, Marino, Fabio, Post, Harm, van den Toorn, Henk W. P, Mohammed, Shabaz, Heck, Albert J. R

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Toward an efficient workflow for the analysis of the human milk peptidome von Dingess, Kelly A., van den Toorn, Henk W. P., Mank, Marko, Stahl, Bernd, Heck, Albert J. R.

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Single-cell derived tumor organoids display diversity in HLA class I peptide presentation von Demmers, Laura C., Kretzschmar, Kai, Van Hoeck, Arne, Bar-Epraïm, Yotam E., van den Toorn, Henk W. P., Koomen, Mandy, van Son, Gijs, van Gorp, Joost, Pronk, Apollo, Smakman, Niels, Cuppen, Edwin, Clevers, Hans, Heck, Albert J. R., Wu, Wei

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Monitoring Human Milk β-Casein Phosphorylation and O -Glycosylation Over Lactation Reveals Distinct Differences between the Proteome and Endogenous Peptidome von Dingess, Kelly A, Gazi, Inge, van den Toorn, Henk W P, Mank, Marko, Stahl, Bernd, Reiding, Karli R, Heck, Albert J R

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Gaining Confidence in the Elusive Histidine Phosphoproteome von Potel, Clement M, Lin, Miao-Hsia, Prust, Nadine, van den Toorn, Henk W. P, Heck, Albert J. R, Lemeer, Simone

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In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1 von Prust, Nadine, van der Laarse, Saar, van den Toorn, Henk W P, van Sorge, Nina M, Lemeer, Simone

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In-Depth Characterization of the Staphylococcus aureus Phosphoproteome Reveals New Targets of Stk1 von Prust, Nadine, van der Laarse, Saar, van den Toorn, Henk W.P., van Sorge, Nina M., Lemeer, Simone

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Toward Full Peptide Sequence Coverage by Dual Fragmentation Combining Electron-Transfer and Higher-Energy Collision Dissociation Tandem Mass Spectrometry von Frese, Christian K, Altelaar, A. F. Maarten, van den Toorn, Henk, Nolting, Dirk, Griep-Raming, Jens, Heck, Albert J. R, Mohammed, Shabaz

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Ultra Acidic Strong Cation Exchange Enabling the Efficient Enrichment of Basic Phosphopeptides von Hennrich, Marco L, van den Toorn, Henk W. P, Groenewold, Vincent, Heck, Albert J. R, Mohammed, Shabaz

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Personalized Proteome Profiles of Healthy and Tumor Human Colon Organoids Reveal Both Individual Diversity and Basic Features of Colorectal Cancer von Cristobal, Alba, van den Toorn, Henk W.P., van de Wetering, Marc, Clevers, Hans, Heck, Albert J.R., Mohammed, Shabaz

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Time-lapse analysis of stem-cell divisions in the Arabidopsis thaliana root meristem von Campilho, Ana, Garcia, Bernardo, Toorn, Henk v.d, Wijk, Henk v, Campilho, Aurélio, Scheres, Ben

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Quantitative and Qualitative Proteome Characteristics Extracted from In-Depth Integrated Genomics and Proteomics Analysis von Low, Teck Yew, van Heesch, Sebastiaan, van den Toorn, Henk, Giansanti, Piero, Cristobal, Alba, Toonen, Pim, Schafer, Sebastian, Hübner, Norbert, van Breukelen, Bas, Mohammed, Shabaz, Cuppen, Edwin, Heck, Albert J.R., Guryev, Victor

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An Augmented Multiple-Protease-Based Human Phosphopeptide Atlas von Giansanti, Piero, Aye, Thin Thin, van den Toorn, Henk, Peng, Mao, van Breukelen, Bas, Heck, Albert J.R.

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The PRoteomics IDEntification (PRIDE) Converter 2 Framework: An Improved Suite of Tools to Facilitate Data Submission to the PRIDE Database and the ProteomeXchange Consortium von Côté, Richard G., Griss, Johannes, Dianes, José A., Wang, Rui, Wright, James C., van den Toorn, Henk W.P., van Breukelen, Bas, Heck, Albert J.R., Hulstaert, Niels, Martens, Lennart, Reisinger, Florian, Csordas, Attila, Ovelleiro, David, Perez-Rivevol, Yasset, Barsnes, Harald, Hermjakob, Henning, Vizcaíno, Juan Antonio

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Deep proteome profiling of Trichoplax adhaerens reveals remarkable features at the origin of metazoan multicellularity von Ringrose, Jeffrey H., van den Toorn, Henk W.P., Eitel, Michael, Post, Harm, Neerincx, Pieter, Schierwater, Bernd, Maarten Altelaar, A.F., Heck, Albert J.R.

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qcML: An Exchange Format for Quality Control Metrics from Mass Spectrometry Experiments von Walzer, Mathias, Pernas, Lucia Espona, Nasso, Sara, Bittremieux, Wout, Nahnsen, Sven, Kelchtermans, Pieter, Pichler, Peter, van den Toorn, Henk W.P., Staes, An, Vandenbussche, Jonathan, Mazanek, Michael, Taus, Thomas, Scheltema, Richard A., Kelstrup, Christian D., Gatto, Laurent, van Breukelen, Bas, Aiche, Stephan, Valkenborg, Dirk, Laukens, Kris, Lilley, Kathryn S., Olsen, Jesper V., Heck, Albert J.R., Mechtler, Karl, Aebersold, Ruedi, Gevaert, Kris, Vizcaíno, Juan Antonio, Hermjakob, Henning, Kohlbacher, Oliver, Martens, Lennart

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Enhancing the Identification of Phosphopeptides from Putative Basophilic Kinase Substrates Using Ti (IV) Based IMAC Enrichment von Zhou, Houjiang, Low, Teck Y., Hennrich, Marco L., van der Toorn, Henk, Schwend, Thomas, Zou, Hanfa, Mohammed, Shabaz, Heck, Albert J.R.

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The Early Metazoan Trichoplax adhaerens Possesses a Functional O-GlcNAc System von Selvan, Nithya, Mariappa, Daniel, van den Toorn, Henk W.P., Heck, Albert J.R., Ferenbach, Andrew T., van Aalten, Daan M.F.

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StatQuant: a post-quantification analysis toolbox for improving quantitative mass spectrometry von van Breukelen, Bas, van den Toorn, Henk W. P., Drugan, Madalina M., Heck, Albert J. R.

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Benefits of Collisional Cross Section Assisted Precursor Selection (caps-PASEF) for Cross-linking Mass Spectrometry von Steigenberger, Barbara, van den Toorn, Henk W.P., Bijl, Emiel, Greisch, Jean-François, Räther, Oliver, Lubeck, Markus, Pieters, Roland J., Heck, Albert J.R., Scheltema, Richard A.

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